From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Thu, 17 Nov 2011 14:50:32 +0000 (+0000)
Subject: fixed bug in remove_primers
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=bc41bf1f0f46fbf4c6468a0bc55bdb093c496084;p=biopieces.git

fixed bug in remove_primers

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1659 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/remove_primers b/bp_bin/remove_primers
index a68fb89..4e4e2e7 100755
--- a/bp_bin/remove_primers
+++ b/bp_bin/remove_primers
@@ -56,10 +56,10 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
       end
 
       if reverse = seq.patscan(options[:reverse].to_s, pos, options[:mismatches], options[:insertions], options[:deletions])
-        record[:REVERSE_POS] = reverse.last.pos
-        record[:REVERSE_LEN] = reverse.last.length
-        pos = reverse.last.pos
-        seq.subseq!(pos)
+        record[:REVERSE_POS] = reverse.first.pos
+        record[:REVERSE_LEN] = reverse.first.length
+        pos = reverse.first.pos
+        seq.subseq!(0, pos)
       end
 
       if pos > 0