From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 10 May 2011 08:20:09 +0000 (+0000)
Subject: polished analyze_assembly
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=b8cfca0b8e890f58e0f1f884d1fdbffda5fd1876;p=biopieces.git

polished analyze_assembly

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1390 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/analyze_assembly b/bp_bin/analyze_assembly
index c6423f8..89b7b32 100755
--- a/bp_bin/analyze_assembly
+++ b/bp_bin/analyze_assembly
@@ -90,11 +90,7 @@ new_record[:MIN]        = lengths.min
 new_record[:MEAN]       = (total.to_f / lengths.size.to_f).to_i
 new_record[:TOTAL]      = total
 new_record[:COUNT]      = lengths.size
-
-if options[:gene_cov]
-  new_record[:GENE_COV]   = gene_cov
-  new_record[:GENE_RATIO] = (gene_cov.to_f / total.to_f).round(4)
-end
+new_record[:GENE_COV]   = gene_cov if options[:gene_cov]
 
 bp.puts new_record