From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 12 Oct 2010 15:14:34 +0000 (+0000)
Subject: polished write_fastq
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=b4a59d2396f71a37194e2c05cc0e5005e7a6eb20;p=biopieces.git

polished write_fastq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1118 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/write_fastq.in b/bp_test/in/write_fastq.in
new file mode 100644
index 0000000..4944eb4
--- /dev/null
+++ b/bp_test/in/write_fastq.in
@@ -0,0 +1,15 @@
+SEQ_NAME: sanger
+SEQ: aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
+SEQ_LEN: 41
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefgh
+---
+SEQ_NAME: solexa
+SEQ: bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb
+SEQ_LEN: 46
+SCORES: ;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefgh
+---
+SEQ_NAME: illumina1.3
+SEQ: ccccccccccccccccccccccccccccccccccccccccc
+SEQ_LEN: 41
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefgh
+---
diff --git a/bp_test/out/write_fastq.out.1 b/bp_test/out/write_fastq.out.1
new file mode 100644
index 0000000..cd45b63
--- /dev/null
+++ b/bp_test/out/write_fastq.out.1
@@ -0,0 +1,12 @@
+@sanger
+aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
++
+@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefgh
+@solexa
+bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb
++
+;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefgh
+@illumina1.3
+ccccccccccccccccccccccccccccccccccccccccc
++
+@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefgh