From: westcott <westcott>
Date: Wed, 28 Jan 2009 15:02:56 +0000 (+0000)
Subject: rarefaction default bug
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=b0d60a507bcea3c4d72028818efd4f6845151f5e;p=mothur.git

rarefaction default bug
---

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 04ae10a..4a151d2 100644
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -429,8 +429,6 @@
 				37D927F30F21331F001D4494 /* nocommand.h */,
 				37D927FA0F21331F001D4494 /* parselistcommand.h */,
 				37D927F90F21331F001D4494 /* parselistcommand.cpp */,
-				37D927FE0F21331F001D4494 /* quitcommand.h */,
-				37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 				37D928080F21331F001D4494 /* rarefactcommand.h */,
 				37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 				37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
@@ -447,6 +445,8 @@
 				37D928460F21331F001D4494 /* summarycommand.cpp */,
 				37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 				37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
+				37D927FE0F21331F001D4494 /* quitcommand.h */,
+				37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 			);
 			name = commands;
 			sourceTree = "<group>";
diff --git a/globaldata.cpp b/globaldata.cpp
index 713ae9a..5f96011 100644
--- a/globaldata.cpp
+++ b/globaldata.cpp
@@ -335,7 +335,7 @@ void GlobalData::clear() {
 	method			=	"furthest";
 	fileroot		=	"";
 	single			=	"sobs-chao-ace-jack-bootstrap-shannon-npshannon-simpson-rarefraction";
-	rarefaction		=	"rarefaction";
+	rarefaction		=	"sobs";
 	shared			=	"sharedSobs-sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN";
 	sharedsummary	=   "sharedSobs-sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN";
 	summary			=	"summary-chao-ace-jack-bootstrap-shannon-npshannon-simpson";