From: westcott <westcott>
Date: Wed, 16 Mar 2011 17:59:01 +0000 (+0000)
Subject: fixed the bug that caused mothur to choke on other commands after running catchall... 
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=afb13a370b1f7876c2820258345915f4b63467c8;p=mothur.git

fixed the bug that caused mothur to choke on other commands after running catchall with a shared file
---

diff --git a/catchallcommand.cpp b/catchallcommand.cpp
index b0ab7c8..66fbf9a 100644
--- a/catchallcommand.cpp
+++ b/catchallcommand.cpp
@@ -382,6 +382,8 @@ int CatchAllCommand::execute() {
 			}
 			string summaryfilename = combineSummmary(sumNames);
 			outputNames.push_back(summaryfilename); outputTypes["summary"].push_back(summaryfilename);
+			
+			globaldata->setSharedFile(sharedfile); globaldata->setFormat("sharedfile");
 		}
 		
 		m->mothurOutEndLine();