From: Michael Hanke Date: Fri, 13 May 2011 18:32:47 +0000 (-0400) Subject: Various fixes X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=af28415b4fb6e8a23a2ccd1c214eb24427e41eca;p=neurodebian.git Various fixes --- diff --git a/sandbox/select_os_options.inc b/sandbox/select_os_options.inc index 46a952e..18693d0 100644 --- a/sandbox/select_os_options.inc +++ b/sandbox/select_os_options.inc @@ -21,3 +21,4 @@ + diff --git a/sandbox/survey.css b/sandbox/survey.css index eb71fc7..65e924a 100644 --- a/sandbox/survey.css +++ b/sandbox/survey.css @@ -6,6 +6,22 @@ body { margin: 1em; } +h1.title { + color: #2C471A; + font-size: 150%; + text-align: center; +} + +h1 { + color: #2C471A; + font-size: 120%; +} + +h2 { + color: #2C471A; + font-size: 100%; +} + div.document { background-color: #fff; padding: 1em; diff --git a/sandbox/survey.rst b/sandbox/survey.rst index 030e84e..9c2e9c1 100644 --- a/sandbox/survey.rst +++ b/sandbox/survey.rst @@ -2,6 +2,9 @@ Scientific software usage in neuroscience research ================================================== +This survey should take about five minutes. After submission you will be +immediately presented with some statistics on previous responses. + .. raw:: html @@ -43,8 +46,8 @@ Scientific software usage in neuroscience research $('#nss_survey').resetForm(); $('#server_response').html("All good"); } else { - alert('status: ' + statusText + '\n\nresponseText: \n' + data.message + - '\n\nThe output div should have already been updated with the responseText.'); + $('#server_response').html(""); + alert(data.message); } } @@ -119,7 +122,7 @@ What type of data are you working with? Please check all items that apply. Electrophysiology
Microspectroscopy
- + @@ -231,10 +234,10 @@ Please indicate how much you agree to the following statements. .. raw:: html -
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-... I rely on an particular application that only runs in this environment +... I rely on a particular application that only runs in this environment .. raw:: html -
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Definitely agree
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@@ -328,13 +331,13 @@ Managed scientific software environment --------------------------------------- The following questions are about a managed environment of scientific software -that is provided to you to carry out computing and data analysis related -research activities. Such an environment is typically managed by **dedicated IT -staff**, and **you don't have permissions to install arbitrary software**. This -environment may be shared by many researchers in a lab, a whole research -institution, or even be publicly accessible. If you have access to multiple -environments of this kind, please describe the one that offers most support for -your particular research purposes. +that is provided to you to carry out computing and data analysis. Such an +environment is typically managed by **dedicated IT staff**, and **you don't +have permissions to install arbitrary software**. This environment may be +shared by many researchers in a lab, a whole research institution, or even be +publicly accessible. If you have access to multiple environments of this kind, +please describe the one that offers most support for your particular research +purposes. .. raw:: html @@ -401,62 +404,62 @@ How much do you agree to the following statements? -This environment provides me with the best available tools for my research. +This environment provides me with the best available tools for my research .. raw:: html -
Definitely agree
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Mostly agree
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The support staff solves all my technical problems and addresses my demands in -a timely fashion. +a timely fashion .. raw:: html -
Definitely agree
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-There are always enough licenses for essential commerical software tools. +There are always enough licenses for essential commerical software tools .. raw:: html -
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-I need to deploy additional software to be able to perform my research in this environment. +I need to deploy additional software to be able to perform my research in this environment .. raw:: html -
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Using this managed environment is more cost effective than operating a suitable -environment myself. +environment myself .. raw:: html -
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.. raw:: html @@ -543,57 +546,57 @@ What **host operating system** are the virtual machines running on? What are your reasons for employing virtualization in you research? -Please indicate how much you agree to the following statements. +Please indicate how much you agree to the following statements .. raw:: html -I can run software that is otherwise incompatible with my system. +I can run software that is otherwise incompatible with my system .. raw:: html -
Definitely agree
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-I have the ability to easily create snapshot of my whole analysis environment. +I have the ability to easily create a snapshot of my whole analysis environment .. raw:: html -
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I can take my complete analysis environment with me and run it on different -machines. +machines .. raw:: html -
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The performance of a virtual machine is sufficient for routine application in my -research. +research .. raw:: html -
Definitely agree
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@@ -603,91 +606,117 @@ Resources for scientific software --------------------------------- Where do you obtain scientific software that you employ in your research? Please -check all items that apply. +check all items that apply .. raw:: html -
+ Directly from vendor or project website .. raw:: html -
+
Retailer .. raw:: html -
+
+ +Comes with the operating system + +.. raw:: html + +
+ +`Comprehensive Perl Archive Network (CPAN) `_ + +.. raw:: html + +
+ +`Comprehensive R Archive Network (CRAN) `_ + +.. raw:: html + +
`Extra Packages for Enterprise Linux (EPEL) `_ .. raw:: html -
+
`Fink `_ .. raw:: html -
+
`FreeBSD ports `_ .. raw:: html -
+
`International neuroinformatics Coordinating Facility (INCF) Research Tools `_ .. raw:: html -
+
`Macports `_ .. raw:: html -
+
`Matlab Central `_ .. raw:: html -
+
`NeuroDebian `_ .. raw:: html -
+
`Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) `_ .. raw:: html -
+
`Python Package Index (PyPi) `_ .. raw:: html -
+
+ +Python bundles: `Enthought Python `_, `Python(x,y) `_ + +.. raw:: html + +
`Sourceforge `_ .. raw:: html -
- +
+
Software selection ------------------ +Please select all software that you are using in your research. + Generic computing/scripting/programming environments ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -714,7 +743,7 @@ Generic computing/scripting/programming environments Shell scripting -Distributed Computing - frameworks and controllers +Distributed computing - frameworks and controllers ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. raw:: html @@ -770,13 +799,15 @@ Imaging MRIcron MRtrix - MVPA Toolbox + Matlab MVPA toolbox + NiBabel/PyNIfTI NiPy/NiTime/DiPy/NiPype - PyMVPA + PyMVPA REST SPM V3D + VoxBo @@ -790,7 +821,7 @@ Data management Human Imaging Database (HID) -Neural Systems Modeling +Neural systems modeling ~~~~~~~~~~~~~~~~~~~~~~~ .. raw:: html @@ -822,12 +853,13 @@ Electrophysiology, MEG/EEG Elekta Neuromag Fieldtrip + KlustaKwik LORETA/sLORETA MNE suite NeuroExplorer OpenMEEG - Openelectrophy + Openelectrophy RTXI Relacs ?Trellis-neuro @@ -867,7 +899,7 @@ Real-time solutions PREEMPT_RT -Psychophysics/Experimental Control +Psychophysics/Experimental control ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. raw:: html @@ -893,14 +925,13 @@ Other + (comma-separated list)
-
--------------------------------------------------------------- -Thanks for filling out the questionaire. You can now submit it. Upon successful -submission you'll get access to the result statistics of all previous -participants. +Thanks for filling out the questionaire. Upon successful submission you will +be presented with some statistics computed from all previous participants. .. raw:: html