From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 8 Jun 2011 12:28:03 +0000 (+0000)
Subject: added tests for complement_seq
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=adc257829b5bc15ce3ed85aa4bdc62cb5a3a08d9;p=biopieces.git

added tests for complement_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1464 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/complement_seq.in b/bp_test/in/complement_seq.in
new file mode 100644
index 0000000..5382cdd
--- /dev/null
+++ b/bp_test/in/complement_seq.in
@@ -0,0 +1,12 @@
+SEQ_NAME: DNA
+SEQ: TACGatrsgctagWCNATCYGACNACTGACTGACN
+SEQ_LEN: 35
+---
+SEQ_NAME: RNA
+SEQ: UACGAUGcuagcnauCYGACNACUG
+SEQ_LEN: 25
+---
+SEQ_NAME: PROTEIN
+SEQ: DENQSYGAPSIF
+SEQ_LEN: 12
+---
diff --git a/bp_test/out/complement_seq.out.1 b/bp_test/out/complement_seq.out.1
new file mode 100644
index 0000000..ab57302
--- /dev/null
+++ b/bp_test/out/complement_seq.out.1
@@ -0,0 +1,12 @@
+SEQ: ATGCtayscgatcWGNTAGRCTGNTGACTGACTGN
+SEQ_LEN: 35
+SEQ_NAME: DNA
+---
+SEQ: ATGCTACgatcgntaGRCTGNTGAC
+SEQ_LEN: 25
+SEQ_NAME: RNA
+---
+SEQ: HENQSRCTPSIF
+SEQ_LEN: 12
+SEQ_NAME: PROTEIN
+---
diff --git a/bp_test/test/test_complement_seq b/bp_test/test/test_complement_seq
new file mode 100755
index 0000000..61c5709
--- /dev/null
+++ b/bp_test/test/test_complement_seq
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean