From: Don Armstrong <don@donarmstrong.com>
Date: Fri, 11 Apr 2014 19:53:26 +0000 (-0700)
Subject: add more debugging output in printSeq
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=a013aa55280e430e62de423f45e2ebbfbbab2f75;p=mothur.git

add more debugging output in printSeq
---

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 5d30871..4c4d773 100644
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -324,6 +324,7 @@ int DeconvoluteCommand::execute() {
               if (pos == string::npos) { // only reps itself
                 ct.printSeq(outNames, it->second.second);
               } else {
+                m->mothurOut("Duplicate " + it->second.second + " " (it->second.second).substr(0,pos) + "\n");
                 ct.printSeq(outNames, (it->second.second).substr(0,pos));
               }
             }