From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Thu, 18 Nov 2010 12:40:10 +0000 (+0000)
Subject: fixed bug in uclust_seq
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=9f30ce7e23b49f00c6f1b1fdeaf257c20a252296;p=biopieces.git

fixed bug in uclust_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1167 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/uclust_seq b/bp_bin/uclust_seq
index 0d194c4..75caf94 100755
--- a/bp_bin/uclust_seq
+++ b/bp_bin/uclust_seq
@@ -40,8 +40,6 @@ class Uclust
     @outfile = outfile
 		@options = options
 		@command = []
-
-    @command << "--rev" if @options[:comp]
   end
 
   # Method that calls Uclusts sorting for sorting a FASTA file
@@ -124,6 +122,7 @@ class Uclust
 	# The command is composed of bits from the @command variable.
 	def execute
 		@command.unshift "nice -n 19"
+    @command << "--rev" if @options[:comp]
 		@command << "> /dev/null 2>&1" unless @options[:verbose]
 		command = @command.join(" ")
     system(command)