From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Mon, 26 Sep 2011 08:43:04 +0000 (+0000)
Subject: fixed bug in patscan_seq arguments
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=9e64d759584e0ebe8a0b741a67fcb7b71068a5e8;p=biopieces.git

fixed bug in patscan_seq arguments

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1536 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/patscan_seq b/bp_bin/patscan_seq
index e09efde..194aaae 100755
--- a/bp_bin/patscan_seq
+++ b/bp_bin/patscan_seq
@@ -46,7 +46,7 @@ class Patscan
   end
 
   # Method to run Patscan
-  def run(comp = nil, type = nil, max_mis = nil, max_hit = nil, verbose = nil)
+  def run(comp = nil, type = nil, max_hit = nil, max_mis = nil, verbose = nil)
     args = []
     args << "scan_for_matches"
     args << "-c"            if comp