From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Mon, 9 May 2011 09:23:40 +0000 (+0000)
Subject: added fix to find_genes
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=9a4d9310d677d1c59dfdd62854fb88184be0d89f;p=biopieces.git

added fix to find_genes

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1383 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/find_genes b/bp_bin/find_genes
index f8fc0e8..16cba9b 100755
--- a/bp_bin/find_genes
+++ b/bp_bin/find_genes
@@ -55,6 +55,10 @@ prodigal = Prodigal.new(infile, outfile, options)
 prodigal.run
 
 prodigal.each do |record|
+  record[:DEFINITION].match /seqhdr="([^"]+)/ do |m| 
+    record[:S_ID] = $1
+  end
+
   bp.puts record
 end