From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Sun, 31 Jan 2010 10:07:15 +0000 (+0000)
Subject: fixed sequence type guessing in create_blast_index
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=8ebf08f44f815ee4d9e6555b1befcd49fd5bc2b8;p=biopieces.git

fixed sequence type guessing in create_blast_index

git-svn-id: http://biopieces.googlecode.com/svn/trunk@855 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/create_blast_index b/bp_bin/create_blast_index
index 9c04c04..61f75ff 100755
--- a/bp_bin/create_blast_index
+++ b/bp_bin/create_blast_index
@@ -69,7 +69,7 @@ close $fh_tmp;
 
 $arg = "-t $options->{ 'index_name' }";
 
-if ( $seq_type eq "protein" ) {
+if ( $seq_type =~ /protein/i ) {
     $arg .= " -p T";
 } else {
     $arg .= " -p F";