From: Heng Li <lh3@live.co.uk>
Date: Thu, 24 Feb 2011 14:36:30 +0000 (+0000)
Subject: more meaningful BAM truncation message
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=8c132db45ec66cf170d1ad481aaaebb92c9cc03e;p=samtools.git

more meaningful BAM truncation message
---

diff --git a/bam.c b/bam.c
index 521c1dd..96aace2 100644
--- a/bam.c
+++ b/bam.c
@@ -79,7 +79,7 @@ bam_header_t *bam_header_read(bamFile fp)
 		// with ESPIPE.  Suppress the error message in this case.
 		if (errno != ESPIPE) perror("[bam_header_read] bgzf_check_EOF");
 	}
-	else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent.\n");
+	else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent. The input is probably truncated.\n");
 	// read "BAM1"
 	magic_len = bam_read(fp, buf, 4);
 	if (magic_len != 4 || strncmp(buf, "BAM\001", 4) != 0) {