From: westcott <westcott>
Date: Fri, 6 Mar 2009 15:02:30 +0000 (+0000)
Subject: added full matrix files
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=8aaea67a29205b8d3fe787d94d0dc5987858d2e6;p=mothur.git

added full matrix files
---

diff --git a/fullmatrix.cpp b/fullmatrix.cpp
new file mode 100644
index 0000000..75cb0df
--- /dev/null
+++ b/fullmatrix.cpp
@@ -0,0 +1,20 @@
+/*
+ *  fullmatrix.cpp
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 3/6/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "fullmatrix.h"
+
+
+/**************************************************************************
+FullMatrix::FullMatrix(ifstream& in) {
+
+}
+~FullMatrix::FullMatrix(){}
+	
+	int FullMatrix::getNumSeqs(){}
+*/
\ No newline at end of file
diff --git a/fullmatrix.h b/fullmatrix.h
new file mode 100644
index 0000000..4fe1145
--- /dev/null
+++ b/fullmatrix.h
@@ -0,0 +1,32 @@
+#ifndef FULLMATRIX_H
+#define FULLMATRIX_H
+/*
+ *  fullmatrix.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 3/6/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "groupmap.h"
+
+class FullMatrix {
+	
+public:
+	FullMatrix(){};
+	FullMatrix(ifstream&);
+	~FullMatrix();
+	
+	int getNumSeqs();
+	
+private:
+	void sortGroups();  //this function sorts the sequences within the matrix.  
+	vector< vector<float> > matrix;  //a 2D distance matrix of all the sequences and their distances to eachother.
+	GroupMap* groupmap;  //maps sequences to groups they belong to.
+	int numSeqs;
+
+};
+
+#endif
\ No newline at end of file