From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 24 Nov 2010 15:11:08 +0000 (+0000)
Subject: added tests for translate_seq
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=89a49368daa0de11ff0915a7d4907deed47ec0eb;p=biopieces.git

added tests for translate_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1169 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/translate_seq.in b/bp_test/in/translate_seq.in
new file mode 100644
index 0000000..6fd765e
--- /dev/null
+++ b/bp_test/in/translate_seq.in
@@ -0,0 +1,3 @@
+SEQ_NAME: test1
+SEQ: ATGCACATTCGACTAGCATCGACGACGCGAGCGACGACGACGATGCGACTAGCTTA
+---
diff --git a/bp_test/out/translate_seq.out.1 b/bp_test/out/translate_seq.out.1
new file mode 100644
index 0000000..202a91b
--- /dev/null
+++ b/bp_test/out/translate_seq.out.1
@@ -0,0 +1,30 @@
+SEQ: MHIRLASTTRATTTMRLA
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: 1
+---
+SEQ: CTFD*HRRRERRRRCD*L
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: 2
+---
+SEQ: AHSTSIDDASDDDDATSL
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: 3
+---
+SEQ: *ASRIVVVARVVDASRMC
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: -1
+---
+SEQ: KLVASSSSLASSMLVECA
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: -2
+---
+SEQ: S*SHRRRRSRRRC*SNVH
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: -3
+---
diff --git a/bp_test/out/translate_seq.out.2 b/bp_test/out/translate_seq.out.2
new file mode 100644
index 0000000..3950fa2
--- /dev/null
+++ b/bp_test/out/translate_seq.out.2
@@ -0,0 +1,10 @@
+SEQ: MHIRLASTTRATTTMRLA
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: 1
+---
+SEQ: *ASRIVVVARVVDASRMC
+SEQ_LEN: 18
+SEQ_NAME: test1
+FRAME: -1
+---
diff --git a/bp_test/test/test_translate_seq b/bp_test/test/test_translate_seq
new file mode 100755
index 0000000..9ca6069
--- /dev/null
+++ b/bp_test/test/test_translate_seq
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -f '1,-1' -O $tmp"
+assert_no_diff $tmp $out.2
+clean