From: martinahansen Date: Mon, 2 Jul 2012 09:00:04 +0000 (+0000) Subject: updated order_pairs X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=7f1364eb5562ae6f5d699e528408e61d1b0b1c0a;p=biopieces.git updated order_pairs git-svn-id: http://biopieces.googlecode.com/svn/trunk@1856 74ccb610-7750-0410-82ae-013aeee3265d --- diff --git a/bp_test/out/order_pairs.out.1 b/bp_test/out/order_pairs.out.1 index e25e55d..49abf3d 100644 --- a/bp_test/out/order_pairs.out.1 +++ b/bp_test/out/order_pairs.out.1 @@ -2,129 +2,167 @@ SCORES: ffeaffd`ce`eecccKLT`bT^]bYHV^BBBBBBBBBBBBBBBBBBBBB SEQ: GGGTCCGCTCCTTTCGCTAGCNGGGGACGCGGGGGGCTGAGGGGNNACGC SEQ_LEN: 50 SEQ_NAME: ILLUMINA-52179E_0004:2:1:1040:5263#TTAGGC/1 +ORDER: paired --- SCORES: BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB SEQ: NNNNNGNNNNNNNTANACNNNNTNNNNNNNANNNNGNNNNNCNNNNNGNN SEQ_LEN: 50 SEQ_NAME: ILLUMINA-52179E_0004:2:1:1040:5263#TTAGGC/2 +ORDER: paired --- SCORES: db`dadddddeeeeedeeeeccdddfffffcdaddbac`d_BBBBBBBBB SEQ: GGGAGGGGGGCGGGCCAGGNTNCGGTTTTTCTCATAGATCCCCCTAGGGG SEQ_LEN: 50 SEQ_NAME: ILLUMINA-52179E_0004:2:1:1043:19446#TTAGGC/1 +ORDER: paired --- SCORES: BBBBGSSNONdddddBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB SEQ: NANNNNNNNCANNNTCAANNNGCACNGGGTNATNNCNATTCNNNCGNCTN SEQ_LEN: 50 SEQ_NAME: ILLUMINA-52179E_0004:2:1:1043:19446#TTAGGC/2 +ORDER: paired --- SCORES: ceceeee\e``cd^^Yb`b`cc``c\accccZT`YTbYb`Y\VZYBBa\Y SEQ: GCCGAGTAGCGTTCNTGGNTACCTTCCGATCCGCGGCCCGCCCCCTGTCT SEQ_LEN: 50 SEQ_NAME: ILLUMINA-52179E_0004:2:1:1045:16499#TTAGGC/1 +ORDER: paired --- SCORES: BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB SEQ: AANAANANCTNCNNANCGNCGGTTTCGTNANNANNGGTTCGCANCGNNNC SEQ_LEN: 50 SEQ_NAME: ILLUMINA-52179E_0004:2:1:1045:16499#TTAGGC/2 +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2412:2210 1:N:0:TAGCTG SEQ: AAACGGATAGGCTTGTTCTTCCAGCAACAACTCGTATTGCTCCAATGCCAGGGCATCAAGCCCGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCA SEQ_LEN: 98 SCORES: _bbaceceggeccgeZddghaegffiiWdghfff``ffgfacfcffhiihhfi\_e\egfcggde]acdccc^aa_`[`aca_a^b_`bbbbbbbS_b +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2412:2210 2:N:0:TAGCTG SEQ: CCGGGCTTGATGCCCTGGCATTGGAGCAATACGAGTTGTTGCTGGAAGAACAAGCCTATCCGTTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT SEQ_LEN: 98 SCORES: ^^_eee^ccgeggiidfdd_ggfhhhfhifhhfgfggffgdeghe_ebfgedfXZcffdggdT`^aeeee^`bcacc\^Z^a[]Q[`b^]^aaBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2284:2226 1:N:0:TAGCTG SEQ: CGCCTTTTCATCAGCAACAGACAGTTACGACGCATATCGCCACCCAAATGTTTGCCGAGGCTAAACGGGTATTGAAACGCGGTGGCCGCTTGCGTATT SEQ_LEN: 98 SCORES: ___eeeeegagffgghdefb_e_eggia`\egfdhhdf`gdfghihiiib_`gghf``cbcabcbc^^_KW`c]Y_bbcc[a[[_^aa]cccc]__ab +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2284:2226 2:N:0:TAGCTG SEQ: GGCCAAATAACCGCTGCAGTTGCTGCTGATAATTCAGGTGACGGTTAGCCACAATACGCAAGCGGCCACCGCGTTTCAATACCCGTTTAGCCTCGGCA SEQ_LEN: 98 SCORES: bbbeeeeegfgggiehihhef_gfgfhfghdffhihhfXc^egc_cgabgffghhfhfhfg`d^cba_ac^\_W]abcb_bccc]X`bQ]`b`^_a__ +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2037:2173 1:N:0:TAGCTG SEQ: CTGGGTGCCACTGTCGCCACCCTGTTAAGTCGTGAACCCGTTACCATCAGCACTGATGCCAACGTCTGGCAGGCCGCCCAGCTAATGACCGAGCAAAA SEQ_LEN: 98 SCORES: _[_cccceeegggffhiiihdfdefhhafeff_efdfgfhifhghhfbgbgdggfdhihhegggeeeebdZ^aaa^_aaX``b]b_bcccXXaV_ccb +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2037:2173 2:N:0:TAGCTG SEQ: AGCCTGGCCCGGATATCCTTGTCAGTGATAATGCCNGTCAGATGCTGCTTGGCATCTAAAATAAGCAAGGATGANACCTTNTGNTCNGTCNNTANCTG SEQ_LEN: 98 SCORES: b__eeeeeggggcgghiiiihefggcgeffagdbfBOY^cffhfgbgfhdggXegghagghfffeggggeXV^_BKZ\_cBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:1958:2175 1:N:0:TAGCTG SEQ: TACCTAAAATAATTAATATCTACAATAGAATAAAATCAGGAAATGTTTATGACACCAGCTCGCCTGTCCATGTTCAGCATGGCTCTGCTTGGTGCTTT SEQ_LEN: 98 SCORES: __acceeegcgggiihihifiiiiiiiiiiefihhhhchhdhiafcghidffghhiihidfggighedhdhibdggegdgeeeedddcddccbcccab +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:1958:2175 2:N:0:TAGCTG SEQ: CTACCTGTGCAAAAAGCACCAAGCAGAGCCATGCTNAACATGGACAGGCGAGCTGGTGTCATAAACATTTCCTGNTTTTANTCTATNGTAGNTANTAA SEQ_LEN: 98 SCORES: bbbeeeecggfeghfggfhihhieh]ffbeghiiiBOYcfghighfghghaedfeeV^abcccce`bdbdc```BKZ^aaBKW^^aBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2155:2169 1:N:0:TAGCTG SEQ: GGGTTCAGGCGCCCGGACCATTCATAACATTCTGCAAAACAGTTTGTTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTGATCTCGTATG SEQ_LEN: 98 SCORES: ___J`cccgZccggghhhhffhbghhfeegffdghhfchhhfaffgbb]e`_c\a_\degdddbbb``^aY]bbb_bbbbbbb`bbbb_]`R]^[WR[ +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2155:2169 2:N:0:TAGCTG SEQ: AACAAACTGTTTTGCAGAATGTTATGAATGGTCCGNGCGCNTNAACCCAGATCGGAAGAGCGTCGTGTAGGGAANGANGGNNGNNCNCGGNNNNNGNC SEQ_LEN: 98 SCORES: a__eeecegcgegihhifhhfcgdghfffiibgheBPPYcBOBOXaffffgfhhhffa`bfe\^cR]Z]`baZ`BBBBBBBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2326:2175 1:N:0:TAGCTG SEQ: GTGCCAAAGAGGTACTGATGCTTTGTTGTTGTGGTTTAGCCGCACATTCAGCCTCGCTGACGGCAGCTAACTGCACATCTTTGGGGATATCCACCAGA SEQ_LEN: 98 SCORES: ^PWYP`R^cRcccgdghS`d_ebc[`ebffddb[ffffagf[O^_Uc`SabeffeegffW\\[XXR^bTGT__]b]_Y_]Zbbba][abb_cbba_aa +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2326:2175 2:N:0:TAGCTG SEQ: GGTGGATATCCCCAAAGATGTGCAGTTAGCTGCCGNCAGCGAGGCTGAATGTGCGGCTAAACCACAACAACAAANCATCANTACCTNTTTGNCANAGA SEQ_LEN: 98 SCORES: ___cc\c`eggcghad`acabgfdg`g^daagaefBPYOafY_fYaa]e\aMWW__[W^Z_RZ^`aa__`Q[`^BBBBBBBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2139:2216 1:N:0:TAGCTG SEQ: CCACCTGCCCGGTTTTAAGATGACTGACCGCCGAACCCACAGCTGCAATATGCCCCACCACTTCATGACCAGCCACCAGCGGATACGCCGACATACCC SEQ_LEN: 98 SCORES: _Z_cccccaY_^cghhbagg[e]de][^ZcghfY_efgfbfdQ^^\bdZaaRMZZT\FRT\LLYYZTGT]_[^a^[^aBBBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2139:2216 2:N:0:TAGCTG SEQ: ATGTGTCGATGCTGGATAACGAATGGGGTATGTCGGTGTATCCGCTGGGGGCTGGTCATGAAGGGGTGGGGCATATTGCAGCTGTGGGTTCGGGGGCC SEQ_LEN: 98 SCORES: JJ\caa`^Ye`gW^[J[Q[`YJJ`dfa^PYbfX^^_H^^eh]fb`aefGZ_BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2110:2236 1:N:0:TAGCTG SEQ: ATTCCTAACAGTAATATGCAGGATGCCCGCAATACAGATCTGCGTTGGCGCGAGCGTTATCTGTCGGTGTTAGCAGATTTCGTGATGGAGATCGGAAG SEQ_LEN: 98 SCORES: ___cc`Sc^J[ecK``f]cY^RPbcRYJQQY^YccacfehhheU^^^eXFS_BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2110:2236 2:N:0:TAGCTG SEQ: CCATCACGCAATCTGCTAACACCGACAGATAACGCTCGCGCCAACGCAGATCTGTATTGCGGGCATCCTGCATATTACTGTTAGGAATAGATCGGAAG SEQ_LEN: 98 SCORES: ZZac^cd`gf`eeifhh`dfbaafagha`g`_`e`a^cZ`edS\deedcc`^_]]bccRTZQW[T^bbb__bbbb__bc]bc_R^bc]_]bbba[[^R +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2326:2150 1:N:0:TAGCTG SEQ: CATAGGCTTTTTTAACGGCCCAGCCAAAGGCGATCAGGCCAAATAGNANTACCCACCAGTACTGTTGCATNGTCTCAGAAATGNNCAATACAAATTGG SEQ_LEN: 98 SCORES: _[_cccccgcaeeaeJb`b^dd_cg]cZedbfU_eghhhddfg[f]BLBLTZ^abbb^aT]b_`]`b`Y`BKT^^ac_YYY_`BBJGQW_b]bbbbbb +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:2326:2150 2:N:0:TAGCTG SEQ: CGGCCNNNACCCAATTTGNNTTGGGCATTTCTGANNNNNNNCNACNNTACTGNNGGGTANTGCTNNNTGNNNNGNNNNNNNNNNNNNNNNNNNNNNNN SEQ_LEN: 98 SCORES: WZ^ceBBBQQQQbffgggBBSQ`_fRZdegffdhBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:1832:2218 1:N:0:TAGCTG SEQ: GCTTTGACATAGTCGCTCCAGAATTGCCAGCTAGGGTTAGCTTGGCAACTGCAGCGACGTAATGTGCTGTGGCAGATCAATTTATCTGTTTTGAATCA SEQ_LEN: 98 SCORES: ^P^PJ\Y`eea`e[daYdecggadgdXJIYVbdc`efg_cdedI^aXIO^abeb\eL_daQU^_V]``]UGTZ\^BBBBBBBBBBBBBBBBBBBBBBB +ORDER: paired --- SEQ_NAME: HWI-ST575:107:C0HE6ACXX:5:1101:1832:2218 2:N:0:TAGCTG SEQ: GGTTATCGATCTGGAAAAAGCAACTAAACCTAAAGCTAAACCACGTAGCGCCGGGTAAATGATTCAAAACAGATAAATTGATCTGCCACAGCACATTA SEQ_LEN: 98 SCORES: ^VYPJQ`c^JJ[b[efg^dHJ`aa`adXd_ZXXbIIIY[af_H^aWHWPZ[`gggFFZ^bd_Z]Zb_]ba\^ZGY_`TZ``cc[bbR]]^aaXQ[bbb +ORDER: paired +--- +SCORES: ffffcfffffded^eddddddbdcdeedcefecfefdffecabccBB`b` +SEQ: CCNAGGAGGAGNCAATAAGAGACCATTCGTATATGATCTCTCAGGAGAGC +SEQ_LEN: 50 +SEQ_NAME: ILLUMINA-52179E_0004:2:1:1044:7943#TTAGGC/1 +ORDER: orphan 1 +--- +SCORES: BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB +SEQ: NNNNNNNNGGNNCNANNANNNNGTNNNTNGNANNNNCNNANTTGNNNNNN +SEQ_LEN: 50 +SEQ_NAME: ILLUMINA-52179E_0004:2:1:1041:14486#TTAGGC/2 +ORDER: orphan 2 ---