From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Sat, 4 Jun 2011 16:02:31 +0000 (+0000)
Subject: added tests for transliterate_vals
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=7f07995239acb6597cf2c5c575aa542ae4b0d194;p=biopieces.git

added tests for transliterate_vals

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1456 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/transliterate_vals.in b/bp_test/in/transliterate_vals.in
new file mode 100644
index 0000000..268184b
--- /dev/null
+++ b/bp_test/in/transliterate_vals.in
@@ -0,0 +1,4 @@
+SEQ_NAME: test
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+---
diff --git a/bp_test/out/transliterate_vals.out.1 b/bp_test/out/transliterate_vals.out.1
new file mode 100644
index 0000000..e94946a
--- /dev/null
+++ b/bp_test/out/transliterate_vals.out.1
@@ -0,0 +1,4 @@
+SEQ: TnCGnTGCTnGCNnTCYGnCNnCTGnCTGnCN
+SEQ_LEN: 32
+SEQ_NAME: test
+---
diff --git a/bp_test/out/transliterate_vals.out.2 b/bp_test/out/transliterate_vals.out.2
new file mode 100644
index 0000000..c087694
--- /dev/null
+++ b/bp_test/out/transliterate_vals.out.2
@@ -0,0 +1,4 @@
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+SEQ_NAME: es
+---
diff --git a/bp_test/test/test_transliterate_vals b/bp_test/test/test_transliterate_vals
new file mode 100755
index 0000000..f680e96
--- /dev/null
+++ b/bp_test/test/test_transliterate_vals
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -k SEQ -s A -r n -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -k SEQ_NAME -d Tt -O $tmp"
+assert_no_diff $tmp $out.2
+clean