From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 18 May 2010 09:47:36 +0000 (+0000)
Subject: fixed harmless bug in remove_adaptor
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=7dbf616e427aaccf8bfefba8b16af6bf854a755c;p=biopieces.git

fixed harmless bug in remove_adaptor

git-svn-id: http://biopieces.googlecode.com/svn/trunk@957 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/remove_adaptor b/bp_bin/remove_adaptor
index 3edf3ac..c709b4f 100755
--- a/bp_bin/remove_adaptor
+++ b/bp_bin/remove_adaptor
@@ -78,13 +78,13 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
             if ( $options->{ "remove" } eq "after" )
             {
                 $record->{ "SEQ" }     = substr $record->{ "SEQ" },    0, $pos;
-                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, 0, $pos;
+                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, 0, $pos if $record->{ "SCORES" };
                 $record->{ "SEQ_LEN" } = $pos;
             }
             else
             {
                 $record->{ "SEQ" }     = substr $record->{ "SEQ" },    $pos + $adaptor_len;
-                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, $pos + $adaptor_len;
+                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, $pos + $adaptor_len if $record->{ "SCORES" };
                 $record->{ "SEQ_LEN" } = length $record->{ "SEQ" };
             }
         }