From: barnett <barnett@9efb377e-2e27-44b9-b91a-ec4abb80ed8b>
Date: Wed, 31 Mar 2010 17:40:13 +0000 (+0000)
Subject: Modified BamDump to spit out TagData (for debugging)
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=78c56aa6066d41c7c63541eafb60c9162c291c0f;p=bamtools.git

Modified BamDump to spit out TagData (for debugging)

git-svn-id: svn+ssh://gene.bc.edu/home/subversion/Derek/BamTools/trunk@43 9efb377e-2e27-44b9-b91a-ec4abb80ed8b
---

diff --git a/BamDumpMain.cpp b/BamDumpMain.cpp
index 2c31015..57bb0b9 100644
--- a/BamDumpMain.cpp
+++ b/BamDumpMain.cpp
@@ -40,7 +40,7 @@ int main(int argc, char* argv[]) {
 	
 	BamAlignment bAlignment;
 	while (reader.GetNextAlignment(bAlignment)) {
-		PrintAlignment(bAlignment);
+            PrintAlignment(bAlignment);
 	}
 
 	reader.Close();
@@ -53,4 +53,9 @@ void PrintAlignment(const BamAlignment& alignment) {
 	cout << "Name: "       << alignment.Name << endl;
 	cout << "Aligned to: " << alignment.RefID;
 	cout << ":"            << alignment.Position << endl;
+        cout << "TagData:    " << alignment.TagData << endl;
+        
+        string readGroup;
+        cout << "ReadGroup:  " << ( alignment.GetReadGroup(readGroup) ? readGroup : "Unknown" ) << endl;
+        cout << endl;
 }