From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Thu, 24 May 2012 20:49:05 +0000 (+0000)
Subject: fixed ugly bug in trim.rb
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=72705084c01a1375ddcfa435c7ce076030ef3a4b;p=biopieces.git

fixed ugly bug in trim.rb

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1829 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/seq/trim.rb b/code_ruby/lib/maasha/seq/trim.rb
index ad8c693..a11159b 100644
--- a/code_ruby/lib/maasha/seq/trim.rb
+++ b/code_ruby/lib/maasha/seq/trim.rb
@@ -132,7 +132,7 @@ module Trim
         {
           c = 0;
 
-          while ((c < min_len) && ((c + i) < len) && (qual[len - (c + i) - 1] - score_base > min_qual))
+          while ((c < min_len) && ((c + i) < len) && (qual[len - (c + i) - 1] - score_base >= min_qual))
             c++;
 
           if (c == min_len)
@@ -170,7 +170,7 @@ module Trim
         {
           c = 0;
 
-          while ((c < min_len) && ((c + i) < len) && (qual[c + i] - score_base > min_qual))
+          while ((c < min_len) && ((c + i) < len) && (qual[c + i] - score_base >= min_qual))
             c++;
 
           if (c == min_len)