From: westcott <westcott>
Date: Tue, 26 Apr 2011 11:45:58 +0000 (+0000)
Subject: blast queryName=templateSeq name bug
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=6fa1725004b26c0af737a684462a55c40dcb11a4;p=mothur.git

blast queryName=templateSeq name bug
---

diff --git a/maligner.cpp b/maligner.cpp
index 1fd27f9..5ea41fc 100644
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -727,7 +727,7 @@ vector<Sequence*> Maligner::getBlastSeqs(Sequence* q, int num) {
 			lasti++;			
 		}
 		
-		numWanted = seen.size();
+		numWanted = mergedResults.size();
 		
 		if (mergedResults.size() < numWanted) { numWanted = mergedResults.size(); }
 //cout << q->getName() << " merged results size = " << mergedResults.size() << '\t' << "numwanted = " << numWanted <<  endl;