From: Heng Li <lh3@live.co.uk>
Date: Thu, 5 Aug 2010 20:03:23 +0000 (+0000)
Subject: minor
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=6df2741e66faa911a11f38a5ee1c42c1f1a523ef;p=samtools.git

minor
---

diff --git a/examples/Makefile b/examples/Makefile
index f54cc63..b12f882 100644
--- a/examples/Makefile
+++ b/examples/Makefile
@@ -43,4 +43,6 @@ calDepth:../libbam.a calDepth.c
 		gcc -g -Wall -O2 -I.. calDepth.c -o $@ -lm -lz -L.. -lbam
 
 clean:
-		rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM ex1*.rg ex1.bcf
\ No newline at end of file
+		rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM ex1*.rg ex1.bcf
+
+# ../samtools pileup ex1.bam|perl -ape '$_=$F[4];s/\^.//g;$x=tr/A-Z/X/;$y=tr/a-z/x/;s/(\d+)(X)/$x-=$1,$2/eg;s/(\d+)(x)/$y-=$1,$2/eg;$_=join("\t",@F[0,1],$x,$y)."\n"'
\ No newline at end of file