From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 7 Aug 2012 13:41:32 +0000 (+0000)
Subject: fixed typo
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=6d44a734c42b4dc23e816ed5089e0443858bc03d;p=biopieces.git

fixed typo

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1885 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/assemble_seq_idba_ud b/bp_bin/assemble_seq_idba_ud
index 888fc1a..e600c03 100755
--- a/bp_bin/assemble_seq_idba_ud
+++ b/bp_bin/assemble_seq_idba_ud
@@ -73,7 +73,7 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
 		commands << "--min_count #{options[:count_min]}"
 		commands << "--min_pairs #{options[:pairs_min]}"
 		commands << "--prefix #{options[:prefix_len]}"
-		commands << "--num_treads #{options[:cpus]}"
+		commands << "--num_threads #{options[:cpus]}"
 		commands << "> /dev/null 2>&1" unless options[:verbose]
 
 		command = commands.join(" ")
diff --git a/bp_bin/find_genes b/bp_bin/find_genes
index a1257c9..15e7f57 100755
--- a/bp_bin/find_genes
+++ b/bp_bin/find_genes
@@ -59,10 +59,6 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
   prodigal.run
 
   prodigal.each do |record|
-    record[:DEFINITION].match /seqhdr="([^"]+)/ do |m| 
-      record[:S_ID] = $1
-    end
-
     output.puts record
   end
 end