From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 12 Oct 2011 18:42:52 +0000 (+0000)
Subject: added crufty puts method to fastq.rb
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=65c95436db284e007aca606472d535137980bd55;p=biopieces.git

added crufty puts method to fastq.rb

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1551 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/fastq.rb b/code_ruby/lib/maasha/fastq.rb
index a6b3610..37d0bbb 100644
--- a/code_ruby/lib/maasha/fastq.rb
+++ b/code_ruby/lib/maasha/fastq.rb
@@ -49,6 +49,16 @@ class Fastq < Filesys
       nil
     end
   end
+
+  # TODO - this should be some custom to_s method instead.
+  def puts(record)
+    if record[:SEQ_NAME] and record[:SEQ] and record[:SCORES]
+      @io.print "@#{record[:SEQ_NAME]}\n"
+      @io.print "#{record[:SEQ]}\n"
+      @io.print "+\n"
+      @io.print "#{record[:SCORES]}\n"
+    end
+  end
 end