From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Mon, 30 Jun 2008 07:30:41 +0000 (+0000)
Subject: removing old crap
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=625ecf365a5b55680c10dd40c0b7db952496c40a;p=biopieces.git

removing old crap

git-svn-id: http://biopieces.googlecode.com/svn/trunk@72 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_usage/read_fasta b/bp_usage/read_fasta
deleted file mode 100644
index 847746b..0000000
--- a/bp_usage/read_fasta
+++ /dev/null
@@ -1,25 +0,0 @@
-Author:         Martin Asser Hansen - Copyright (C) - All rights reserved
-
-Contact:        mail@maasha.dk
-
-Date:           August 2007
-
-License:        GNU General Public License version 2 (http://www.gnu.org/copyleft/gpl.html)
-
-Description:    Read FASTA entries from one or more files. The length of each sequence is also determined.
-
-Usage:          $script [options] -i <FASTA file(s)>
-
-Options:   [-i <file(s)> | --data_in=<file(s)>]  -  Comma separated list of files or glob expression to read.
-Options:   [-n <int>     | --num=<int>]          -  Limit number of records to read.
-Options:   [-I <file>    | --stream_in=<file>]   -  Read input stream from file  -  Default=STDIN
-Options:   [-O <file>    | --stream_out=<file>]  -  Write output stream to file  -  Default=STDOUT
-
-Examples:   $script -i test.fna             -  Read FASTA entries from file.
-Examples:   $script -i test1.fna,test2.fna  -  Read FASTA entries from files.
-Examples:   $script -i '*.fna'              -  Read FASTA entries from files.
-Examples:   $script -i test.fna -n 10       -  Read first 10 FASTA entries from file.
-
-Keys out: SEQ_NAME  -  Name of sequence.
-Keys out: SEQ       -  Sequence.
-Keys out: SEQ_LEN   -  Length of sequence.
diff --git a/bp_usage/read_tab b/bp_usage/read_tab
deleted file mode 100644
index 7e82aa4..0000000
--- a/bp_usage/read_tab
+++ /dev/null
@@ -1,24 +0,0 @@
-Author:         Martin Asser Hansen - Copyright (C) - All rights reserved
-
-Contact:        mail@maasha.dk
-
-Date:           August 2007
-
-License:        GNU General Public License version 2 (http://www.gnu.org/copyleft/gpl.html)
-
-Description:    Read a table or selected table columns.
-
-Usage:          $script [options] -i <tabular file(s)>
-
-Options:   [-i <file(s)> | --data_in=<file(s)>]  -  Read tabular data from file.
-Options:   [-d <regex>   | --delimit=<regex>]    -  Changes delimiter  -  Default='\s+'
-Options:   [-c <string>  | --cols=<string>]      -  Comma separated list of cols to read in that order.
-Options:   [-k <string>  | --keys]=<string>]     -  Comma separated list of keys to use for each column.
-Options:   [-s <int>     | --skip=<int>]         -  Skip number of initial records.
-Options:   [-n <int>     | --num=<int>]          -  Limit number of records to read.
-Options:   [-I <file>    | --stream_in=<file>]   -  Read input stream from file  -  Default=STDIN
-Options:   [-O <file>    | --stream_out=<file>]  -  Write output stream to file  -  Default=STDOUT
-
-Examples:   $script -i test.tab -d ',' -c 7,4 -k SEQ,SEQ_NAME
-
-Keys out: V0, V1, V2 ... Vn  -  Default column names.