From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Mon, 18 Apr 2011 14:17:30 +0000 (+0000)
Subject: added clip_adaptor biopiece
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=401a60fc88ba5e86cfe81412c9414d35aa7cbf09;p=biopieces.git

added clip_adaptor biopiece

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1340 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/clip_adaptor.in b/bp_test/in/clip_adaptor.in
new file mode 100644
index 0000000..dd0bce5
--- /dev/null
+++ b/bp_test/in/clip_adaptor.in
@@ -0,0 +1,8 @@
+SEQ_NAME: 3_XeZ3OvwXsN1/1
+SEQ: CGCGAATCGGACTGGATNTCGCCGCTGACGACCTC
+SEQ_LEN: 35
+SCORES: a`_aa_^````\TY``WDGU[BBBBBBBBBBBBBB
+ADAPTOR_POS: 26
+ADAPTOR_LEN: 9
+ADAPTOR_MATCH: GACGACCTC
+---
diff --git a/bp_test/out/clip_adaptor.out.1 b/bp_test/out/clip_adaptor.out.1
new file mode 100644
index 0000000..464527d
--- /dev/null
+++ b/bp_test/out/clip_adaptor.out.1
@@ -0,0 +1,8 @@
+SEQ_NAME: 3_XeZ3OvwXsN1/1
+SEQ: CGCGAATCGGACTGGATNTCGCCGCT
+SEQ_LEN: 26
+SCORES: a`_aa_^````\TY``WDGU[BBBBB
+ADAPTOR_POS: 26
+ADAPTOR_LEN: 9
+ADAPTOR_MATCH: GACGACCTC
+---
diff --git a/bp_test/test/test_clip_adaptor b/bp_test/test/test_clip_adaptor
new file mode 100755
index 0000000..61c5709
--- /dev/null
+++ b/bp_test/test/test_clip_adaptor
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean