From: Heng Li <lh3@live.co.uk>
Date: Mon, 18 May 2009 20:01:23 +0000 (+0000)
Subject: Added a note to the manual. Currently SAMtools used unaligned words in
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=3eb62cf4488c354e6e0dc033c3cacc9f3a5fb941;p=samtools.git

Added a note to the manual. Currently SAMtools used unaligned words in
several places. Although this does not cause bus errors to me, it may
affect portability. Please see the "Bus error" wiki page for more
information. Also thank James Bonfields for pointing this out.
---

diff --git a/samtools.1 b/samtools.1
index acd27bc..802e7a5 100644
--- a/samtools.1
+++ b/samtools.1
@@ -319,7 +319,7 @@ _
 .SH LIMITATIONS
 .PP
 .IP o 2
-Reference sequence names and lengths are not acquired from the BAM/SAM header.
+Unaligned words used in bam_import.c, bam_endian.h, bam.c and bam_aux.c.
 .IP o 2
 CIGAR operation P is not properly handled at the moment.
 .IP o 2