From: Pat Schloss <pschloss@umich.edu> Date: Wed, 4 Apr 2012 19:22:31 +0000 (-0400) Subject: Pat's fix X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=3dba4eab583a0ac8e3638cac5970641c79e661f9;p=mothur.git Pat's fix --- diff --git a/trimflowscommand.h b/trimflowscommand.h index 0dc1cd9..8656fd0 100644 --- a/trimflowscommand.h +++ b/trimflowscommand.h @@ -58,7 +58,9 @@ private: bool allFiles; int processors; int numFPrimers, numRPrimers; - int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs; + int numLinkers, numSpacers; + + int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs; int numFlows; float signal, noise; bool fasta; @@ -66,7 +68,6 @@ private: string flowFileName, oligoFileName, outputDir; - map<string, int> barcodes; map<string, int> primers; vector<string> revPrimer;