From: martinahansen Date: Wed, 15 Jun 2011 06:47:36 +0000 (+0000) Subject: added tests for blast_seq_pair X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=3cac33acb69ad83566a97a2fce6d8049931b8d29;p=biopieces.git added tests for blast_seq_pair git-svn-id: http://biopieces.googlecode.com/svn/trunk@1476 74ccb610-7750-0410-82ae-013aeee3265d --- diff --git a/bp_test/in/blast_seq_pair.in.1 b/bp_test/in/blast_seq_pair.in.1 new file mode 100644 index 0000000..7a36a9f --- /dev/null +++ b/bp_test/in/blast_seq_pair.in.1 @@ -0,0 +1,6 @@ +SEQ_NAME: nuc1 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +SEQ_NAME: nuc2 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- diff --git a/bp_test/in/blast_seq_pair.in.2 b/bp_test/in/blast_seq_pair.in.2 new file mode 100644 index 0000000..4da00bb --- /dev/null +++ b/bp_test/in/blast_seq_pair.in.2 @@ -0,0 +1,6 @@ +SEQ_NAME: prot1 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- +SEQ_NAME: prot2 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- diff --git a/bp_test/in/blast_seq_pair.in.3 b/bp_test/in/blast_seq_pair.in.3 new file mode 100644 index 0000000..9b376c7 --- /dev/null +++ b/bp_test/in/blast_seq_pair.in.3 @@ -0,0 +1,6 @@ +SEQ_NAME: nuc1 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +SEQ_NAME: prot2 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- diff --git a/bp_test/in/blast_seq_pair.in.4 b/bp_test/in/blast_seq_pair.in.4 new file mode 100644 index 0000000..fcbae37 --- /dev/null +++ b/bp_test/in/blast_seq_pair.in.4 @@ -0,0 +1,6 @@ +SEQ_NAME: prot1 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- +SEQ_NAME: nuc2 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- diff --git a/bp_test/out/blast_seq_pair.out.1 b/bp_test/out/blast_seq_pair.out.1 new file mode 100644 index 0000000..9ec2f0d --- /dev/null +++ b/bp_test/out/blast_seq_pair.out.1 @@ -0,0 +1,21 @@ +SEQ_NAME: nuc1 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +SEQ_NAME: nuc2 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 737 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 0 +Q_END: 736 +S_BEG: 0 +S_END: 736 +E_VAL: 0.0 +BIT_SCORE: 1461.0 +STRAND: + +--- diff --git a/bp_test/out/blast_seq_pair.out.2 b/bp_test/out/blast_seq_pair.out.2 new file mode 100644 index 0000000..959ea42 --- /dev/null +++ b/bp_test/out/blast_seq_pair.out.2 @@ -0,0 +1,21 @@ +SEQ_NAME: prot1 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- +SEQ_NAME: prot2 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- +REC_TYPE: BLAST +Q_ID: prot1 +S_ID: prot2 +IDENT: 100.0 +ALIGN_LEN: 245 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 0 +Q_END: 244 +S_BEG: 0 +S_END: 244 +E_VAL: 1.0e-146 +BIT_SCORE: 500.0 +STRAND: + +--- diff --git a/bp_test/out/blast_seq_pair.out.3 b/bp_test/out/blast_seq_pair.out.3 new file mode 100644 index 0000000..e9f4d5a --- /dev/null +++ b/bp_test/out/blast_seq_pair.out.3 @@ -0,0 +1,51 @@ +SEQ_NAME: nuc1 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +SEQ_NAME: prot2 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: prot2 +IDENT: 100.0 +ALIGN_LEN: 244 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 2 +Q_END: 733 +S_BEG: 1 +S_END: 244 +E_VAL: 5.0e-146 +BIT_SCORE: 498.0 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: prot2 +IDENT: 26.53 +ALIGN_LEN: 49 +MISMATCHES: 36 +GAPS: 1 +Q_BEG: 444 +Q_END: 298 +S_BEG: 75 +S_END: 122 +E_VAL: 2.2 +BIT_SCORE: 14.6 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: prot2 +IDENT: 36.36 +ALIGN_LEN: 11 +MISMATCHES: 7 +GAPS: 0 +Q_BEG: 448 +Q_END: 416 +S_BEG: 169 +S_END: 179 +E_VAL: 3.7 +BIT_SCORE: 13.9 +STRAND: + +--- diff --git a/bp_test/out/blast_seq_pair.out.4 b/bp_test/out/blast_seq_pair.out.4 new file mode 100644 index 0000000..6facc0d --- /dev/null +++ b/bp_test/out/blast_seq_pair.out.4 @@ -0,0 +1,51 @@ +SEQ_NAME: prot1 +SEQ: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +--- +SEQ_NAME: nuc2 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +REC_TYPE: BLAST +Q_ID: prot1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 244 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 1 +Q_END: 244 +S_BEG: 2 +S_END: 733 +E_VAL: 5.0e-146 +BIT_SCORE: 498.0 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: prot1 +S_ID: nuc2 +IDENT: 26.53 +ALIGN_LEN: 49 +MISMATCHES: 35 +GAPS: 1 +Q_BEG: 75 +Q_END: 122 +S_BEG: 298 +S_END: 444 +E_VAL: 2.2 +BIT_SCORE: 14.6 +STRAND: - +--- +REC_TYPE: BLAST +Q_ID: prot1 +S_ID: nuc2 +IDENT: 36.36 +ALIGN_LEN: 11 +MISMATCHES: 7 +GAPS: 0 +Q_BEG: 169 +Q_END: 179 +S_BEG: 416 +S_END: 448 +E_VAL: 3.7 +BIT_SCORE: 13.9 +STRAND: - +--- diff --git a/bp_test/out/blast_seq_pair.out.5 b/bp_test/out/blast_seq_pair.out.5 new file mode 100644 index 0000000..c986212 --- /dev/null +++ b/bp_test/out/blast_seq_pair.out.5 @@ -0,0 +1,186 @@ +SEQ_NAME: nuc1 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +SEQ_NAME: nuc2 +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 245 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 2 +Q_END: 736 +S_BEG: 2 +S_END: 736 +E_VAL: 1.0e-173 +BIT_SCORE: 590.0 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 245 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 734 +Q_END: 0 +S_BEG: 0 +S_END: 734 +E_VAL: 8.0e-166 +BIT_SCORE: 565.0 +STRAND: - +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 245 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 736 +Q_END: 2 +S_BEG: 2 +S_END: 736 +E_VAL: 7.0e-164 +BIT_SCORE: 558.0 +STRAND: - +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 245 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 0 +Q_END: 734 +S_BEG: 0 +S_END: 734 +E_VAL: 2.0e-162 +BIT_SCORE: 554.0 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 245 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 735 +Q_END: 1 +S_BEG: 1 +S_END: 735 +E_VAL: 7.0e-160 +BIT_SCORE: 545.0 +STRAND: - +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 100.0 +ALIGN_LEN: 245 +MISMATCHES: 0 +GAPS: 0 +Q_BEG: 1 +Q_END: 735 +S_BEG: 1 +S_END: 735 +E_VAL: 2.0e-159 +BIT_SCORE: 543.0 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 41.67 +ALIGN_LEN: 12 +MISMATCHES: 7 +GAPS: 0 +Q_BEG: 303 +Q_END: 268 +S_BEG: 148 +S_END: 183 +E_VAL: 3.6 +BIT_SCORE: 14.8 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 41.67 +ALIGN_LEN: 12 +MISMATCHES: 7 +GAPS: 0 +Q_BEG: 148 +Q_END: 183 +S_BEG: 268 +S_END: 303 +E_VAL: 3.6 +BIT_SCORE: 14.8 +STRAND: - +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 55.56 +ALIGN_LEN: 9 +MISMATCHES: 4 +GAPS: 0 +Q_BEG: 555 +Q_END: 581 +S_BEG: 98 +S_END: 124 +E_VAL: 6.8 +BIT_SCORE: 13.9 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 36.36 +ALIGN_LEN: 11 +MISMATCHES: 7 +GAPS: 0 +Q_BEG: 506 +Q_END: 538 +S_BEG: 416 +S_END: 448 +E_VAL: 6.8 +BIT_SCORE: 13.9 +STRAND: - +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 36.36 +ALIGN_LEN: 11 +MISMATCHES: 7 +GAPS: 0 +Q_BEG: 448 +Q_END: 416 +S_BEG: 506 +S_END: 538 +E_VAL: 6.8 +BIT_SCORE: 13.9 +STRAND: + +--- +REC_TYPE: BLAST +Q_ID: nuc1 +S_ID: nuc2 +IDENT: 55.56 +ALIGN_LEN: 9 +MISMATCHES: 4 +GAPS: 0 +Q_BEG: 98 +Q_END: 124 +S_BEG: 555 +S_END: 581 +E_VAL: 6.8 +BIT_SCORE: 13.9 +STRAND: + +--- diff --git a/bp_test/test/test_blast_seq_pair b/bp_test/test/test_blast_seq_pair new file mode 100755 index 0000000..b78cc78 --- /dev/null +++ b/bp_test/test/test_blast_seq_pair @@ -0,0 +1,23 @@ +#!/bin/bash + +source "$BP_DIR/bp_test/lib/test.sh" + +run "$bp -I $in.1 -O $tmp" +assert_no_diff $tmp $out.1 +clean + +run "$bp -I $in.2 -O $tmp" +assert_no_diff $tmp $out.2 +clean + +run "$bp -I $in.3 -O $tmp" +assert_no_diff $tmp $out.3 +clean + +run "$bp -I $in.4 -O $tmp" +assert_no_diff $tmp $out.4 +clean + +run "$bp -I $in.1 -p tblastx -O $tmp" +assert_no_diff $tmp $out.5 +clean