From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 13 Apr 2011 11:36:12 +0000 (+0000)
Subject: added remove_mids tests
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=3bea3f1039083f7f53b762b26c604577f9bb7c27;p=biopieces.git

added remove_mids tests

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1324 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/remove_mids.in b/bp_test/in/remove_mids.in
new file mode 100644
index 0000000..3f9eabc
--- /dev/null
+++ b/bp_test/in/remove_mids.in
@@ -0,0 +1,8 @@
+SEQ_NAME: test1
+SEQ: atcgTAGACTGCACgtcag
+SEQ_LEN: 19
+---
+SEQ_NAME: test2
+SEQ: TAGACTGCACgtcag
+SEQ_LEN: 15
+---
diff --git a/bp_test/out/remove_mids.out.1 b/bp_test/out/remove_mids.out.1
new file mode 100644
index 0000000..a492e51
--- /dev/null
+++ b/bp_test/out/remove_mids.out.1
@@ -0,0 +1,10 @@
+SEQ_NAME: test1
+SEQ: atcgTAGACTGCACgtcag
+SEQ_LEN: 19
+---
+SEQ_NAME: test2
+SEQ: gtcag
+SEQ_LEN: 5
+MID: TAGACTGCAC
+MID_NUM: 100
+---
diff --git a/bp_test/out/remove_mids.out.2 b/bp_test/out/remove_mids.out.2
new file mode 100644
index 0000000..bd47b2d
--- /dev/null
+++ b/bp_test/out/remove_mids.out.2
@@ -0,0 +1,10 @@
+SEQ_NAME: test1
+SEQ: gtcag
+SEQ_LEN: 5
+MID: TAGACTGCAC
+MID_NUM: 100
+---
+SEQ_NAME: test2
+SEQ: TAGACTGCACgtcag
+SEQ_LEN: 15
+---
diff --git a/bp_test/test/test_remove_mids b/bp_test/test/test_remove_mids
new file mode 100755
index 0000000..79717d0
--- /dev/null
+++ b/bp_test/test/test_remove_mids
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -p 4 -O $tmp"
+assert_no_diff $tmp $out.2
+clean