From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 21 Nov 2012 09:30:07 +0000 (+0000)
Subject: added exception handling for missing SFF coordinates
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=39a50c1789ae8f1d4a8ffafdfa2f8eb4b34257fb;p=biopieces.git

added exception handling for missing SFF coordinates

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1992 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/sff.rb b/code_ruby/lib/maasha/sff.rb
index b0ec738..7111f64 100644
--- a/code_ruby/lib/maasha/sff.rb
+++ b/code_ruby/lib/maasha/sff.rb
@@ -195,7 +195,11 @@ class Read
 
   # Method that converts a Read object's data to a Biopiece record (a hash).
   def to_bp
-    coordinates_get
+    # Simulated SFF files may not have coordinates.
+    begin
+      coordinates_get
+    rescue
+    end
 
     hash = {}