From: Don Armstrong <don@donarmstrong.com>
Date: Wed, 21 Feb 2018 00:28:00 +0000 (-0800)
Subject: Merge branch 'master' into jobs/data_scientist
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=3471d2b08d25a70ce51ff1ae17eb8e58ce772344;p=resume.git

Merge branch 'master' into jobs/data_scientist
---

3471d2b08d25a70ce51ff1ae17eb8e58ce772344
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@@@ -1,65 -1,53 +1,56 @@@
  #+OPTIONS: ^:nil
  #+OPTIONS: toc:nil
  #+TITLE: Resume
- #+AUTHOR: Don Armstrong
+ #+AUTHOR: Don L. Armstrong
  #+LATEX_CMD: xelatex
  #+LATEX_CLASS: dlaresume
- #+LATEX_CLASS_OPTIONS: [10pt,breaklinks]
- 
- #+BEGIN_EXPORT latex
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-   \begin{minipage}[c][0.6in]{2.3in}
-   {\color{headings}\fontsize{24pt}{24pt}\selectfont {\textsc{\textbf{\myauthor}}}}
-   {\footnotesize
-   \href{mailto:\myemail}{\myemail} \hfill
-   +1~714-813-8531 \\
-   {\centering  \href{\myweb}{\myweb} 
-   \href{https://github.com/dondelelcaro}{https://github.com/dondelelcaro}
-   }
-   }
-   \vfill
-   \end{minipage}
-   \hfill
-    \begin{minipage}[t]{0.0in}
-      % dummy (needed here)
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- %  \medskip
-   % Address and contact block
-   \hfill
-   \begin{minipage}[c][0.6in]{0.6in}
-   \href{https://dla2.us/res}{\qrcode[tight,level=L,nolink,height=0.6in]{https://dla2.us/res}}
-   \end{minipage}
-   \vspace{1em}
- #+END_EXPORT
+ # #+LATEX_CLASS_OPTIONS: [10pt,breaklinks]
  
+ * Experience
+ ** Research Scientist at UIUC \hfill 2015--2017
+ + Epigenetic modifications associated with PTSD, the genomic basis of
+   the development of parturition in mammals, and detecting adverse
+   pregnancy outcomes using urinary exosomes.
+ ** Postdoctoral Researcher at USC \hfill 2013--2015
+ + Identifying genes and causal alleles associated with Systemic Lupus
+   Erythematosus using genome-wide association, next-generation
+   sequencing, computational and biochemical approaches.
+ ** Postdoctoral Researcher at UCR \hfill 2010--2012
+ + Identifying genes which are associated with Systemic Lupus
+   Erythematosus using prior information and targeted trio-based
+   studies.
+ ** Debian Developer \hfill 2004--Present
+ + \emph{Debian Project}, Developer; Technical Committee Member
+   (2010--2016), Technical Committee Chair (2015--2016).
  
  * Education
- ** UC Riverside
- + *PhD* in Cell, Molecular and Developmental Biology
- + *BS* in Biology
+ ** Doctor of Philosophy (PhD) \hfill UC Riverside
+  + Cell, Molecular and Developmental Biology.
+ ** Batchelor of Science (BS) in Biology \hfill UC Riverside
+ 
  * Skills
 -** Genomics and Epigenomics
 -+ *NGS* and array-based Genomics and Epigenomics of complex human
 -  diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina
 -  bead arrays, and Affymetrix microarrays from sample collection to
 -  publication.
 -+ Reproducible, scalable bioinformatics analysis using make,
 -  *nextflow*, and *cwl* based workflows on cloud- and cluster-based
 -  systems on terabyte-scale datasets
 -+ Alignment, annotation, and variant calling using existing and custom
 -  software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
 -+ Correcting for and experimental design to overcome multiple
 -  testing, confounders, and batch effects using Bayesian and
 -  frequentist methods approaches
 -# + Using evolutionary genomics to identify causal human variants
 -** Statistics
 -+ Statistical modeling (regression, inference, prediction, and
 -  learning in very large (> 1TB) datasets)
 -+ Addressing confounders and batch effects
 -# + Reproducible research
 +** Data Science
 ++ Reproducible, scalable analyses using *R*, *perl*, and python with
 +  workflows on cloud- and cluster-based systems on terabyte-scale
 +  datasets
 ++ Experimental design and correction to overcome multiple testing,
 +  confounders, and batch effects using Bayesian and frequentist
 +  methods
 ++ Design, development, and deployment of algorithms and data-driven
 +  products, including APIs, reports, and interactive web applications
 ++ Statistical modeling (regression, inference, prediction/forecasting,
 +  time series, and machine learning in very large (> 1TB) datasets)
 ++ Data mining, cleaning, processing and quality assurance of data
 +  sources and products using tidydata formalisms
 ++ Visualization using *R*, ggplot, Shiny, and custom written routines.
 +** Software Development
 ++ Languages: perl, R, C, C++, python, groovy, sh, make
 ++ Collaborative Development: git, travis, continuous integration,
 +  automated testing
 ++ Web, Mobile: Shiny, jQuery, JavaScript
 ++ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
 ++ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
 +  Powerpoint
  ** Big Data
  + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
  + Inter-process communication: MPI, OpenMP