From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 4 Sep 2012 12:05:30 +0000 (+0000)
Subject: fixed bug in clip_adaptor where LEFT_POS > RIGHT_POS
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=2a6c5a8e4d2e4dad19a4664dfb0e0bd2f83da0c1;p=biopieces.git

fixed bug in clip_adaptor where LEFT_POS > RIGHT_POS

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1911 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/clip_adaptor.in b/bp_test/in/clip_adaptor.in
index e8e5b8e..13d1a4b 100644
--- a/bp_test/in/clip_adaptor.in
+++ b/bp_test/in/clip_adaptor.in
@@ -25,3 +25,14 @@ ADAPTOR_POS_RIGHT: 72
 ADAPTOR_LEN_RIGHT: 10
 ADAPTOR_PAT_RIGHT: tgctagctag
 ---
+SEQ_NAME: test
+SEQ: GATCGATCGTacgagcagcatctgacgtatcgatcgttgattagttgctagctatgcagtctacgacgagcaTGCTAGCTAG
+SEQ_LEN: 82
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghhgfedcba`_^]\[ZYXWVUTSRQPONMLKJIHGFEDChhh
+ADAPTOR_POS_LEFT: 72
+ADAPTOR_LEN_LEFT: 10
+ADAPTOR_PAT_LEFT: tgctagctag
+ADAPTOR_POS_RIGHT: 0
+ADAPTOR_LEN_RIGHT: 10
+ADAPTOR_PAT_RIGHT: gatcgatcgt
+---
diff --git a/bp_test/out/clip_adaptor.out.1 b/bp_test/out/clip_adaptor.out.1
index 1a03457..cdac978 100644
--- a/bp_test/out/clip_adaptor.out.1
+++ b/bp_test/out/clip_adaptor.out.1
@@ -25,3 +25,14 @@ ADAPTOR_POS_RIGHT: 72
 ADAPTOR_LEN_RIGHT: 10
 ADAPTOR_PAT_RIGHT: tgctagctag
 ---
+SEQ_NAME: test
+SEQ: 
+SEQ_LEN: 0
+SCORES: 
+ADAPTOR_POS_LEFT: 72
+ADAPTOR_LEN_LEFT: 10
+ADAPTOR_PAT_LEFT: tgctagctag
+ADAPTOR_POS_RIGHT: 0
+ADAPTOR_LEN_RIGHT: 10
+ADAPTOR_PAT_RIGHT: gatcgatcgt
+---