From: Derek <derekwbarnett@gmail.com>
Date: Tue, 22 Jun 2010 03:17:38 +0000 (-0400)
Subject: Updated temp file path stubs to reflect input BAM file stub, so that simultaneous... 
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=2498eeef5404327a4914de39bec6ab8a6d149462;p=bamtools.git

Updated temp file path stubs to reflect input BAM file stub, so that simultaneous sort runs don't interfere with each other.
---

diff --git a/bamtools_sort.cpp b/bamtools_sort.cpp
index 816ac82..b18cf58 100644
--- a/bamtools_sort.cpp
+++ b/bamtools_sort.cpp
@@ -176,9 +176,17 @@ int SortTool::Run(int argc, char* argv[]) {
 // constructor
 SortTool::SortToolPrivate::SortToolPrivate(SortTool::SortSettings* settings) 
     : m_settings(settings)
-    , m_tempFilenameStub("bamtools.sort.temp.")
     , m_numberOfRuns(0) 
-{ }
+{ 
+    // set filename stub depending on inputfile path
+    // that way multiple sort runs don't trip on each other's temp files
+    if ( m_settings) {
+        size_t extensionFound = m_settings->InputBamFilename.find(".bam");
+        if (extensionFound != string::npos )
+            m_tempFilenameStub = m_settings->InputBamFilename.substr(0,extensionFound);
+        m_tempFilenameStub.append(".sort.temp.");
+    }
+}
 
 // destructor
 SortTool::SortToolPrivate::~SortToolPrivate(void) { }