From: westcott <westcott>
Date: Tue, 26 Apr 2011 11:40:11 +0000 (+0000)
Subject: *** empty log message ***
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=1e39c7af79c75317b61e457bf72a14e2138902fc;hp=836150c0a3666899ad58426388f4999d6cf8829a;p=mothur.git

*** empty log message ***
---

diff --git a/maligner.cpp b/maligner.cpp
index 252b453..1fd27f9 100644
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -733,11 +733,11 @@ vector<Sequence*> Maligner::getBlastSeqs(Sequence* q, int num) {
 //cout << q->getName() << " merged results size = " << mergedResults.size() << '\t' << "numwanted = " << numWanted <<  endl;		
 		for (int i = 0; i < numWanted; i++) {
 //cout << db[mergedResults[i]]->getName()  << '\t' << mergedResults[i] << endl;	
-			if (db[mergedResults[i]]->getName() != q->getName()) { 
+			//if (db[mergedResults[i]]->getName() != q->getName()) { 
 				Sequence* temp = new Sequence(db[mergedResults[i]]->getName(), db[mergedResults[i]]->getAligned());
 				refResults.push_back(temp);
 				indexes.push_back(mergedResults[i]);
-			}
+			//}
 //cout << mergedResults[i] << endl;
 		}
 //cout << "done " << q->getName()  << endl;