From: Bo Li <bli@cs.wisc.edu>
Date: Wed, 21 Aug 2013 18:07:52 +0000 (-0500)
Subject: Fixed a minor bug which only affects paired-end reads for reporting how many alignmen... 
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=1c50ecf9ddc331100184b9c3f95b9d400e4e8303;p=rsem.git

Fixed a minor bug which only affects paired-end reads for reporting how many alignments are processed when RSEM generates BAM outputs
---

diff --git a/BamWriter.h b/BamWriter.h
index a4e7dc5..2a325d6 100644
--- a/BamWriter.h
+++ b/BamWriter.h
@@ -106,7 +106,7 @@ void BamWriter::work(HitWrapper<PairedEndHit> wrapper) {
 	bam1_t *b, *b2;
 	PairedEndHit *hit;
 
-	int cnt = 0;
+	HIT_INT_TYPE cnt = 0;
 
 	b = bam_init1();
 	b2 = bam_init1();