From: peterjc
Date: Fri, 23 Mar 2012 13:04:05 +0000 (+0000)
Subject: Add TODO note about reference lengths
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=181c7c1165d171e0de9858d76aff23617a83044f;hp=fe8fbc9eae570d7afc3e0e91df735e6b6fdc329d;p=samtools.git
Add TODO note about reference lengths
---
diff --git a/padding.c b/padding.c
index b330326..8d0df07 100644
--- a/padding.c
+++ b/padding.c
@@ -61,6 +61,7 @@ int bam_pad2unpad(bamFile in, bamFile out)
int n2 = 0, m2 = 0, *posmap = 0;
h = bam_header_read(in);
+ /* TODO - The reference sequence lengths in the BAM + SAM headers should be updated */
bam_header_write(out, h);
b = bam_init1();
r.l = r.m = q.l = q.m = 0; r.s = q.s = 0;