From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 27 Nov 2012 07:22:55 +0000 (+0000)
Subject: added -c to nuc dist plot
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=1445a21d5065ea544c88be1103976c3feb63dca7;p=biopieces.git

added -c to nuc dist plot

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2004 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb
index 3139d49..f5b426f 100755
--- a/bp_scripts/QA_Illumina_report.rb
+++ b/bp_scripts/QA_Illumina_report.rb
@@ -78,7 +78,7 @@ system(
    analyze_vals -k SEQ -o #{analyze_vals_trim_noadapt_file} |
    plot_distribution -k SEQ_LEN -T 'Sequence length distribution' -X 'Sequence length' -t png -o #{lendist_file} |
    plot_scores -c -t png -o #{scores_file} |
-   plot_nucleotide_distribution -t png -o #{nucdist_file} |
+   plot_nucleotide_distribution -c -t png -o #{nucdist_file} |
    bin_vals -k SEQ_LEN -b 25 |
    plot_distribution -T '25 bases bin sequence length distribution' -X 'Sequence length' -k SEQ_LEN_BIN -t png -o #{lendist_bin_file} |
    mean_scores |