From: Erik Garrison <erik.garrison@bc.edu>
Date: Tue, 8 Jun 2010 17:05:59 +0000 (-0400)
Subject: json output
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=12d1865e534b6561d0becb68afef351ebf0f74f8;p=bamtools.git

json output
---

diff --git a/bamtools_convert.cpp b/bamtools_convert.cpp
index 607c380..655c25a 100644
--- a/bamtools_convert.cpp
+++ b/bamtools_convert.cpp
@@ -187,7 +187,7 @@ void BamTools::PrintJSON(ostream& out, const BamAlignment& a) {
         for ( ; cigarIter != cigarEnd; ++cigarIter ) {
             const CigarOp& op = (*cigarIter);
             if (cigarIter != cigarBegin) out << ",";
-            out << "[\"" << op.Length << ",\"" << op.Type << "\"]";
+            out << "\"" << op.Length << op.Type << "\"";
         }
         out << "],";
     }