From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 8 Jun 2011 13:28:48 +0000 (+0000)
Subject: added tests for remove_indels
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=12caec9475cd4dccdf8fc581e48083f56647d74a;hp=3db449bfd9f63f0999dd75e49013d6d26a5aa5e7;p=biopieces.git

added tests for remove_indels

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1466 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/in/remove_indels.in b/bp_test/in/remove_indels.in
new file mode 100644
index 0000000..306ef68
--- /dev/null
+++ b/bp_test/in/remove_indels.in
@@ -0,0 +1,4 @@
+SEQ_NAME: test
+SEQ: ~~--...TACGC..~~--NATCYGACNACTGACTGACN..~~--__
+SEQ_LEN: 46
+---
diff --git a/bp_test/out/remove_indels.out.1 b/bp_test/out/remove_indels.out.1
new file mode 100644
index 0000000..29e8644
--- /dev/null
+++ b/bp_test/out/remove_indels.out.1
@@ -0,0 +1,4 @@
+SEQ: TACGCNATCYGACNACTGACTGACN__
+SEQ_LEN: 27
+SEQ_NAME: test
+---
diff --git a/bp_test/test/test_remove_indels b/bp_test/test/test_remove_indels
new file mode 100755
index 0000000..61c5709
--- /dev/null
+++ b/bp_test/test/test_remove_indels
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean