From: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue, 8 Feb 2011 17:39:44 +0000 (-0500)
Subject: VM: nd-vmsetupwizard - add option for sourcing of FSL/AFNI .sh files in user"s .profile
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=0ea682fed12952a1db4f2c7ed18dbbfcbb40612d;p=neurodebian.git

VM: nd-vmsetupwizard - add option for sourcing of FSL/AFNI .sh files in user"s .profile
---

diff --git a/tools/nd-vmsetupwizard b/tools/nd-vmsetupwizard
index abc5821..37cc549 100755
--- a/tools/nd-vmsetupwizard
+++ b/tools/nd-vmsetupwizard
@@ -88,6 +88,19 @@ EOT
 	sudo bash -c "mkdir -p $cfg_dir && touch $success_flag"
 fi
 
+if ! grep -q '/etc/fsl/fsl.sh' $HOME/.profile && \
+   zenity --question $icon_opt --title="FSL/AFNI Environments" \
+--text="Packages, such as AFNI and FSL, provide large collections of command line tools which are available from their private directories, and require custom environment variables to be set for proper functioning.  Usually you need to source /etc/fsl/fsl.sh or /etc/afni/afni.sh in your environments.
+
+Do you want to get those files, if available, sourced automatically for your environment?
+"; then
+   for t in fsl afni; do
+	cf="/etc/$t/$t.sh"
+	grep -q -e "$cf" $HOME/.profile || \
+		echo "[ -e \"$cf\" ] && . $cf" >> $HOME/.profile
+   done
+fi
+
 # create symlink to shared folder into homedir
 [ ! -e $HOME/host ] && ln -s /mnt/host $HOME/host