From: Heng Li <lh3@live.co.uk>
Date: Fri, 24 Apr 2009 19:44:46 +0000 (+0000)
Subject:  * samtools-0.1.3-4 (r242)
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=0a5f488be0185854a13828f8fd87c7efb9d5f88e;p=samtools.git

 * samtools-0.1.3-4 (r242)
 * fixed a memory leak
---

diff --git a/bam_md.c b/bam_md.c
index a998f1b..303a83d 100644
--- a/bam_md.c
+++ b/bam_md.c
@@ -81,8 +81,11 @@ int bam_fillmd(int argc, char *argv[])
 
 	b = bam_init1();
 	while ((ret = bam_read1(fp, b)) >= 0) {
-		if (tid != b->core.tid)
+		if (tid != b->core.tid) {
+			free(ref);
 			ref = fai_fetch(fai, header->target_name[b->core.tid], &len);
+			tid = b->core.tid;
+		}
 		bam_fillmd1(b, ref, is_equal);
 		bam_write1(fpout, b);
 	}
diff --git a/bamtk.c b/bamtk.c
index a9daa52..b10c339 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -3,7 +3,7 @@
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.3-3"
+#define PACKAGE_VERSION "0.1.3-4 (r242)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);