** Batchelor of Science (BS) in Biology \hfill UC Riverside
* Skills
-** Programming Languages
+** Programming
+ [[http://r-project.org][R]], [[http://www.perl.org][Perl]], sh (bash, POSIX, and zsh), SQL, PL/SQL, C/C++, HTML, CSS,
javascript
+ + Algorithm design, data structure design, relational database
+ design, file format specifications, API/ABI compatibility
+** Systems Administration
+ + Data/system security, disaster recovery procedures
+ + Systems specifications, configuration, and integration with
+ existing systems.
+ + Monitoring and performance analysis
** Applications and Daemons
+ Web: apache, ngix, varnish, REST, SOAP
+ SQL servers: PostgreSQL, MySQL (including failover and replication)
** Statistics
+ Statistical modeling in very large datasets
+ Addressing confounders and batch effects
-** Genomics and Epigenomics
-+ NGS and array-based Genomics and Epigenomics of complex human
- diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
- bead arrays, and Affymetrix microarrays from sample collection to
- publication.
-+ Reproducible, scalable bioinformatics analysis using make,
- nextflow, and cwl based workflows on cloud- and cluster-based
- systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and custom
- software, including GATK, bwa, STAR, and kallisto.
-+ Correcting for and experimental design to overcome multiple
- testing, confounders, and batch effects using Bayesian and
- frequentist methods approaches
-+ Using evolutionary genomics to identify causal human variants
** Big Data
+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
+ Inter-process communication: MPI, OpenMP
+ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
Source: https://dla2.us/pres
-* Funding and Awards
-** Grants
-+ 2017 R Consortium: *[[https://www.r-consortium.org/blog/2017/04/03/q1-2017-isc-grants][Adding Linux Binary Builders to R-Hub]]* Role:
- Co-PI
-+ 2015 Blue Waters Allocation Grant: *Making ancestral trees using Bayesian
- inference to identify disease-causing genetic variants* Role:
- Primary Investigator
-+ *Tracking placenta and uterine funciton using urinary extracellular vesicles* (R21
- RFA-HD-16-037) Role: Key Personnel
-+ *NIAMS* R01-AR045650-04 *Genetics of Childhood Onset SLE* to Chaim O. Jacob.
- Role: Key Personnel
-** Scholarships and Fellowships
-+ 2001--2003: University of California, Riverside Doctoral Fellowship
-+ 1997--2001: Regents of the University of California Scholarship.
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