text-align: left;
}
+ul.simple {
+ margin-bottom: 1em;
+}
+
ul.keywordmatches li.goodmatch a {
font-weight: bold;
}
color: #060;
}
+dt {
+ font-weight: bold;
+ margin-top: 1em;
+}
+
dt:target,
.highlight {
background-color: #fbe54e;
border: 0px
}
+#troubleshooting dt,
div#frequently-asked-questions dt {
font-weight: bold;
margin-top: 1em;
+ margin-left: 1em;
cursor: pointer;
+ display: list-item;
+ list-style-image:url(neurodebian_bullet.png);
}
-dt:after { content: "\203A\203A"; padding-left: .25em;}
+div#frequently-asked-questions dt:after {
+ content: "\203A\203A";
+ padding-left: .25em;
+}
div#sitemap ul {
float: left;
font-size: 70%;
}
-.linkmore:before {
+.nojavascriptinstructions {
+ font-size: 70%;
+}
+
+.expandinstructions {
+ font-size: 70%;
+ display: none;
+}
+
+.linkmore:before,
+.nojavascriptinstructions:before,
+.expandinstructions:before {
content: "["
}
-.linkmore:after {
+.linkmore:after,
+.nojavascriptinstructions:after,
+.expandinstructions:after {
content: "]"
}
+
{{ super() }}
{% endblock %}
<li class="right" style="position:relative;top:3px"><div class="g-plusone"></div></li>
-<li class="right" style="position:relative;top:1px"><a href="https://twitter.com/share" class="twitter-share-button" data-size="large" data-hashtags="neurodebian" data-dnt="true">Tweet</a></li?
+<li class="right" style="position:relative;top:1px"><a href="https://twitter.com/share" class="twitter-share-button" data-size="large" data-hashtags="neurodebian" data-dnt="true"></a></li?
{% endblock %}
{% block sidebar1 %}{% endblock %}
<script type="text/javascript">gapi.plusone.go();</script>
<!-- Twitter -->
<script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0];if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src="//platform.twitter.com/widgets.js";fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script>
+<!-- trigger convenience setup with javascript enabled -->
+<script type="text/javascript">
+ $('dt').click(function(e){
+ $(this).nextUntil('dt').toggle();
+ });
+ $('dd').hide();
+ $('.expandinstructions').show();
+ $('.nojavascriptinstructions').hide();
+</script>
{% endblock %}
Frequently Asked Questions
**************************
+.. raw:: html
+
+ <div class="expandinstructions">Click on an item to expand it</div>
+
Why NeuroDebian?
In the course of our own research endeavors |we| have joined forces to
develop `PyMVPA -- a Python framework for multivariate pattern analysis of
.. include:: link_names.txt
.. include:: substitutions.txt
-
-.. raw:: html
-
- <script type="text/javascript">
- $('dt').click(function(e){
- $(this).nextUntil('dt').toggle();
- });
- $('dd').hide();
- </script>
-
.. raw:: html
- <div id="reposetup" style="display:none">
+ <div class="nojavascriptinstructions">
+ This form requires javascript. If disabled, incomplete instructions are
+ displayed below</div>
+ <div id="reposetup">
+ <div class="nojavascriptinstructions">
+ Instructions for Debian-derived systems
+ </div>
You can enable NeuroDebian on your system by simply copying and pasting the
following two commands into a terminal window. This will add the NeuroDebian
</div> <!-- end reposetup -->
- <div id="vmsetup" style="display:none">
+ <div id="vmsetup">
+ <div class="nojavascriptinstructions">
+ Instructions for non-Debian systems
+ </div>
For all non-Debian operating systems we recommend to deploy NeuroDebian as a
`virtual appliance`_ (virtual machine). On all modern hardware (built within
limit: 10,
rate: 300000});
</script>
+ <div class="nojavascriptinstructions">
+ The news widget requires javascript
+ </div>
.. _identi.ca: http://identi.ca/neurodebian
.. _twitter: http://twitter.com/NeuroDebian
updateout($("#release").val(), $("#mirror").val());
});
- foldbuttontoggle('morepublications');
-
-
+ $('#reposetup').hide()
+ $('#vmsetup').hide()
</script>
-
-
Promotion
---------
+.. raw:: html
+
+ <div class="expandinstructions">Click on an item to expand it</div>
+
* `Publications <http://neuro.debian.net/index.html#publications>`_ and
promotional materials
- - `Debian / NeuroDebian tri-fold
+ - `(Neuro)Debian tri-fold
<http://neuro.debian.net/_files/brochure_debian-neurodebian.pdf>`_
* Conferences presence of the team presenting Debian_,
NeuroDebian_, and related work:
-
**May 2-6, 2011** `Paradyn/Condor Week <http://www.cs.wisc.edu/condor/ParadynCondorWeek2011>`_, Madison, Wisconsin, USA
Hanke, M. `Talk: Integrating Condor into the Debian operating system <http://www.cs.wisc.edu/condor/ParadynCondorWeek2011/presentations/hanke-condor-debian.pdf>`__
**June 26-30, 2011** `HBM 2011 <http://www.humanbrainmapping.org/HBM2011>`_, Québec City, Canada
**July 21-23, 2011** `PsychoPy Workshop and Codesprint <https://scanlab.psych.yale.edu/public/psychopy>`_, New Haven, CT, USA
**August 25-30, 2011** `EuroSciPy 2011/ Python in NeuroScience <http://www.euroscipy.org/conference/euroscipy2011>`_, Paris, France
-
2011/08/27, 16:30 -- 17:00, Scientific track
- Halchenko, Yaroslav O. `Talk: π's in Debian or Scientific Debian: NumPy,
- SciPy and beyond <http://www.euroscipy.org/talk/4379>`__
+ Halchenko, Yaroslav O. `Talk: π's in Debian or Scientific Debian: NumPy,
+ SciPy and beyond <http://www.euroscipy.org/talk/4379>`__
2011/08/29, 14:00 -- 14:30, Neuroimaging data processing
Halchenko, Yaroslav O. `Talk: The virtues and sins of PyMVPA <http://pythonneuro.sciencesconf.org/899>`__
2011/08/30, 10:30 -- 10:45, Workflows and pipelines for data processing
Hanke, M. `Talk: More than batteries included: NeuroDebian <http://pythonneuro.sciencesconf.org/883>`__
2011/08/30, 12:00 -- 12:15, Data management and databasing
- Hanke, M. `Talk: NiBabel: Conductor for a cacophony of neuro-imaging file formats <http://pythonneuro.sciencesconf.org/901>`__
+ Hanke, M. `Talk: NiBabel: Conductor for a cacophony of neuro-imaging file formats <http://pythonneuro.sciencesconf.org/901>`__
**September 8, 2011** `INCF Cross-Task Force Hackathon <http://atlasing.incf.org/wiki/Sept8>`_, Boston, MA, USA
**November 12-16, 2011** `SfN 2011 <http://www.sfn.org/am2011/>`_, Washington, District Columbia, USA
Booth #3207
- `Invite us <mailto:team@neuro.debian.net>`_
+* `Invite us <mailto:team@neuro.debian.net>`_ to talk about NeuroDebian.
* `Inviting contributions and new members to join the NeuroDebian project
<https://openhatch.org/+projects/NeuroDebian>`_
.. _PyMVPA: http://www.pymvpa.org
-Downloads
----------
-
-* `NeuroDebian 6.0.5 image (32bit)
- <http://neuro.debian.net/debian/vm/NeuroDebian_6.0.5_i386.ova>`_ [~559MB]
-
- *This image should work on virtually all systems that are supported by*
- VirtualBox_ *and can be used whenever the, otherwise preferable, 64bit image
- is not compatible with a host machine.*
-
-* `NeuroDebian 6.0.5 image (64bit)
- <http://neuro.debian.net/debian/vm/NeuroDebian_6.0.5_amd64.ova>`_ [~575MB]
-
- *This image only works on 64bit host machines with active hardware
- virtualization support. The should include all recent Apple hardware and most
- 64bit Windows systems.*
-
-Virtual appliances above carry guest additions for 4.x series of the
-VirtualBox. If you still have VirtualBox 3.x, use previous 6.0.2
-virtual appliances:
-
-* `NeuroDebian 6.0.2 image (32bit)
- <http://neuro.debian.net/debian/vm/neurodebian_6.0.2_i386.zip>`_ [~545MB]
-
-* `NeuroDebian 6.0.2 image (64bit)
- <http://neuro.debian.net/debian/vm/neurodebian_6.0.2_amd64.zip>`_ [~560MB]
-
-.. note::
-
- This older virtual appliances are distributed as a `zip` file. Please
- extract all files from the `.zip` file, using appropriate software
- for your operating system.
-
-.. note::
-
- You can verify that you have downloaded archives correctly using
- `md5sums -c MD5SUMS
- <http://neuro.debian.net/debian/vm/MD5SUMS>`_ . You can also verify
- the authenticity of the `MD5SUMS
- <http://neuro.debian.net/debian/vm/MD5SUMS>`_ itself using `gpg
- --verify MD5SUMS.gpg
- <http://neuro.debian.net/debian/vm/MD5SUMS.gpg>`_ signed with
- NeuroDebian archive key.
-
-* `VirtualBox download page <http://www.virtualbox.org/wiki/Downloads>`_ (Windows, Linux, Mac,
- Solaris)
-
- *This webpage offers installers of the VirtualBox application, as well as the
- documentation.*
-
-Changes
--------
-
-6.0.5 -- 10 Nov 2011
-
- * Updated core system to Debian squeeze 6.0.3
- * Updated shipped virtualbox-ose guest-utils and guest-x11 to 4.0.10
-
- - ``~/host`` is now symlinked to correct path ``/media/sf_host``
- - ``brain`` user is added to ``vboxsf`` group so mounted host
- directories should become readily available
-
- * Root partition size and swap space got doubled in size (40GB
- and 2GB correspondingly). Space is allocated dynamically so
- the actual size of the virtual drive should not grow unless
- you use it
-
-6.0.4 -- 13 Jun 2011
-
- * Updated shipped virtualbox-ose guest-utils and guest-x11 to 4.0.4
-
-6.0.3 -- 12 Jun 2011 [Superseded in the archive by 6.0.4]
-
- * Updated to Squeeze 6.0.1
- * Updated VirtualBox guest additions to 4.0.4 from backports.debian.org
- * Appliance is available as a single file (.ova) ready for the import
-
-6.0.2 -- 08 Feb 2011
-
-6.0.1 -- 01 Dec 2010
-
Documentation
-------------
Troubleshooting
~~~~~~~~~~~~~~~
-Updating the VM or installing new packages doesn't work.
+.. raw:: html
+
+ <div class="expandinstructions">Click on an item to expand it</div>
+Updating the VM or installing new packages doesn't work
The VM uses as service that tries to figure out the best/closest package
repository for you. In some network environments this service might not work
well, or not at all. To check if this is a problem, you can modify the
Only modify lines that refer to ``geomirror`` (all of them), but do **not**
modify entries for ``security.debian.org``.
-I cannot hear sounds played in the virtual machine.
-
+I cannot hear sounds played in the virtual machine
By default the sound is muted. To enable playback launch the mixer applet by
clicking on the mixer icon in the task bar. Unmute the master volume control.
Now click on the "Volume control" to load the channel mixer dialog. Unmute
now be able to hear sounds played within the virtual machines through your
host computer's speakers.
-I have upgraded VirtualBox from 3.x series to 4.x, and my VM lost
-mounted host directories.
-
+My VM lost mounted host directories after upgrading from VirtualBox from 3.x to 4.x
NeuroDebian VMs prior 6.0.3 were shipped with guest additions from
3.x series of VirtualBox and some initial versions of VirtualBox in
4.x series have failed to mount host directories properly.
virtualbox-ose-guest-utils virtualbox-ose-guest-x11
and reboot VM.
+
+
+What has changed
+----------------
+
+.. raw:: html
+
+ <div class="expandinstructions">Click on an item to expand it</div>
+
+6.0.5 -- 10 Nov 2011
+ * Updated core system to Debian squeeze 6.0.3
+ * Updated shipped virtualbox-ose guest-utils and guest-x11 to 4.0.10
+
+ - ``~/host`` is now symlinked to correct path ``/media/sf_host``
+ - ``brain`` user is added to ``vboxsf`` group so mounted host
+ directories should become readily available
+
+ * Root partition size and swap space got doubled in size (40GB
+ and 2GB correspondingly). Space is allocated dynamically so
+ the actual size of the virtual drive should not grow unless
+ you use it
+
+6.0.4 -- 13 Jun 2011
+ * Updated shipped virtualbox-ose guest-utils and guest-x11 to 4.0.4
+
+6.0.3 -- 12 Jun 2011 [Superseded in the archive by 6.0.4]
+ * Updated to Squeeze 6.0.1
+ * Updated VirtualBox guest additions to 4.0.4 from backports.debian.org
+ * Appliance is available as a single file (.ova) ready for the import
+
+6.0.2 -- 08 Feb 2011
+ * Minor update
+
+6.0.1 -- 01 Dec 2010
+ * Minor update
projects / neurodebian.git / commitdiff