changed defaults in slayer to minsnp=10 and realign=t

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 11193329c604d13a20d4094a08292954eb2c54bd..9299f897657c993e92707216f03ec3e8590ec7f2 100644 (file)
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -336,7 +336,7 @@ ChimeraSlayerCommand::ChimeraSlayerCommand(string option)  {
                        temp = validParameter.validFile(parameters, "minbs", false);                    if (temp == "not found") { temp = "90"; }
                        convert(temp, minBS);
                        
-                       temp = validParameter.validFile(parameters, "minsnp", false);                   if (temp == "not found") { temp = "100"; }
+                       temp = validParameter.validFile(parameters, "minsnp", false);                   if (temp == "not found") { temp = "10"; }
                        convert(temp, minSNP);
 
                        temp = validParameter.validFile(parameters, "parents", false);                  if (temp == "not found") { temp = "3"; }