#+LATEX_CLASS_OPTIONS: [10pt,breaklinks]
#+BEGIN_EXPORT latex
-\begin{minipage}[t]{0.4\textwidth}
+\begin{minipage}[t]{0.45\textwidth}
\begin{minipage}[c][0.6in]{2.3in}
{\color{headings}\fontsize{24pt}{24pt}\selectfont {\textsc{\textbf{\myauthor}}}}
{\footnotesize
+ *PhD* in Cell, Molecular and Developmental Biology
+ *BS* in Biology
* Skills
-** Genomics and Epigenomics
-+ *NGS* and array-based Genomics and Epigenomics of complex human
- diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina
- bead arrays, and Affymetrix microarrays from sample collection to
- publication.
+** Biostatistics
++ Experimental design and biostatistical analyses to optimize
+ discovery in the face of multiple testing, confounders, and batch
+ effects using Bayesian and frequentist methods in *R*
++ Genomics and Epigenomics of complex phenotypes using *RNA-seq*, DNA
+ sequencing, *RRBS*, bead arrays, and microarrays
+ Reproducible, scalable bioinformatics analysis using make,
*nextflow*, and *cwl* based workflows on cloud- and cluster-based
systems on terabyte-scale datasets
+ Alignment, annotation, and variant calling using existing and custom
- software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
-+ Correcting for and experimental design to overcome multiple
- testing, confounders, and batch effects using Bayesian and
- frequentist methods approaches
-# + Using evolutionary genomics to identify causal human variants
-** Statistics
-+ Statistical modeling (regression, inference, prediction, and
- learning in very large (> 1TB) datasets)
-+ Addressing confounders and batch effects
+ software
++ Design, development, and deployment of algorithms and data-driven
+ products, including APIs, reports, and interactive web applications
++ Statistical modeling (regression, inference, prediction/forecasting,
+ time series, and machine learning in very large (> 1TB) datasets)
++ Data mining, cleaning, processing and quality assurance of data
+ sources and products using tidydata formalisms
++ Visualization using *R*, ggplot, Shiny, and custom written routines.
# + Reproducible research
** Big Data
+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
+ Inter-process communication: MPI, OpenMP
+ Filestorage: Gluster, CEFS, GPFS, Lustre
+ Linux system administration
+** Communication and Training
++ Strong written communication skills as evidenced by publication
+ record
++ Strong verbal and presentation skills as evidenced by presentation
+ and teaching record
** Mentoring and Leadership
+ Mentored graduate students and Outreachy and Google Summer of Code
interns
+ Former chair of Debian's Technical Committee
-+ Head developer behind https://bugs.debian.org
** Software Development
+ Languages: perl, R, C, C++, python, groovy, sh, make
+ Collaborative Development: git, travis, continuous integration,
+ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
+ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
Powerpoint
-** Communication
-+ Strong written communication skills as evidenced by publication
- record
-+ Strong verbal and presentation skills as evidenced by presentation
- and teaching record
# ** Consortia Involvement
# + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
# + *Psychiatric Genomics Consortium*: Identification of epigenetic
\end{minipage}
\medskip
\hfill
-\begin{minipage}[t]{0.55\textwidth}
+\begin{minipage}[t]{0.5\textwidth}
#+END_EXPORT
* Experience
* Publications and Presentations
+ 24 peer-reviewed publications cited over 1800 times:
https://dla2.us/pubs
-+ Publication record in GWAS, expression analysis of microarrays, SLE,
- GBM, epigenetics, comparative evolution of mammals, and lipid
- membranes
+ H index of 11
+ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
Source: https://dla2.us/pres