added ugly hack to assemble_tag_contigs

git-svn-id: http://biopieces.googlecode.com/svn/trunk@673 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_bin/assemble_tag_contigs b/bp_bin/assemble_tag_contigs
index 9b605efbbb43e8cc92767662f8153dddd0f1367b..b49372718f1d7e26b37de779de3a97f937ff0778 100755 (executable)
--- a/bp_bin/assemble_tag_contigs
+++ b/bp_bin/assemble_tag_contigs
@@ -48,6 +48,8 @@ $options = Maasha::Biopieces::parse_options(
 $in  = Maasha::Biopieces::read_stream( $options->{ "stream_in" } );
 $out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
 
+`cd "$ENV{ BP_C }/Maasha/src" && make`; # FIXME OMG this is crufty!
+
 $tmp_dir = Maasha::Biopieces::get_tmpdir();
     
 $bed_file = "$tmp_dir/assemble_tag_contigs.bed";