+ *BS* in Biology
* Skills
** Genomics and Epigenomics
-+ *NGS* and array-based Genomics and Epigenomics of complex human
- diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina
- bead arrays, and Affymetrix microarrays from sample collection to
++ *NGS* and array-based linkage and association-based mapping of
+ complex phenotypes using DNA sequencing, RNA-seq, Illumina bead
+ arrays, and Affymetrix microarrays from sample collection to
publication.
-+ Reproducible, scalable bioinformatics analysis using make,
- *nextflow*, and *cwl* based workflows on cloud- and cluster-based
- systems on terabyte-scale datasets
++ Reproducible, scalable bioinformatics analysis using R, perl,
+ python, make, *nextflow*, and *cwl* based workflows on cloud- and
+ cluster-based systems on terabyte-scale datasets
+ Alignment, annotation, and variant calling using existing and custom
software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
-+ Correcting for and experimental design to overcome multiple
- testing, confounders, and batch effects using Bayesian and
- frequentist methods approaches
-# + Using evolutionary genomics to identify causal human variants
++ Experimental design and correction to overcome multiple testing,
+ confounders, and batch effects using Bayesian and frequentist
+ methods
** Statistics
+ Statistical modeling (regression, inference, prediction, and
learning in very large (> 1TB) datasets)
+ Addressing confounders and batch effects
-# + Reproducible research
** Big Data
+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
+ Inter-process communication: MPI, OpenMP
+ Mentored graduate students and Outreachy and Google Summer of Code
interns
+ Former chair of Debian's Technical Committee
-+ Head developer behind https://bugs.debian.org
+# + Head developer behind https://bugs.debian.org
** Software Development
+ Languages: perl, R, C, C++, python, groovy, sh, make
+ Collaborative Development: git, travis, continuous integration,