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+ *PhD* in Cell, Molecular and Developmental Biology
+ *BS* in Biology
* Skills
-** Genomics and Epigenomics
-+ *NGS* and array-based linkage and association-based mapping of
- complex phenotypes using DNA sequencing, RNA-seq, Illumina bead
- arrays, and Affymetrix microarrays from sample collection to
- publication.
-+ Reproducible, scalable bioinformatics analysis using R, perl,
- python, make, *nextflow*, and *cwl* based workflows on cloud- and
- cluster-based systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and custom
- software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
+** Data Science
++ Reproducible, scalable analyses using *R*, *perl*, and python with
+ workflows on cloud- and cluster-based systems on terabyte-scale
+ datasets
+ Experimental design and correction to overcome multiple testing,
confounders, and batch effects using Bayesian and frequentist
methods
-** Statistics
-+ Statistical modeling (regression, inference, prediction, and
- learning in very large (> 1TB) datasets)
-+ Addressing confounders and batch effects
++ Design, development, and deployment of algorithms and data-driven
+ products, including APIs, reports, and interactive web applications
++ Statistical modeling (regression, inference, prediction/forecasting,
+ time series, and machine learning in very large (> 1TB) datasets)
++ Data mining, cleaning, processing and quality assurance of data
+ sources and products using tidydata formalisms
++ Visualization using *R*, ggplot, Shiny, and custom written routines.
+** Software Development
++ Languages: perl, R, C, C++, python, groovy, sh, make
++ Collaborative Development: git, travis, continuous integration,
+ automated testing
++ Web, Mobile: Shiny, jQuery, JavaScript
++ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
++ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
+ Powerpoint
** Big Data
+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
+ Inter-process communication: MPI, OpenMP
+ Filestorage: Gluster, CEFS, GPFS, Lustre
+ Linux system administration
+** Genomics and Epigenomics
++ Linkage and association-based mapping of complex phenotypes using
+ next-generation sequencing and arrays
++ Alignment, annotation, and variant calling using existing and custom
+ software
** Mentoring and Leadership
+ Mentored graduate students and Outreachy and Google Summer of Code
interns
+ Former chair of Debian's Technical Committee
-# + Head developer behind https://bugs.debian.org
-** Software Development
-+ Languages: perl, R, C, C++, python, groovy, sh, make
-+ Collaborative Development: git, travis, continuous integration,
- automated testing
-+ Web, Mobile: Shiny, jQuery, JavaScript
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
-+ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
- Powerpoint
** Communication
+ Strong written communication skills as evidenced by publication
record
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* Experience
* Publications and Presentations
+ 24 peer-reviewed publications cited over 1800 times:
https://dla2.us/pubs
-+ Publication record in GWAS, expression analysis of microarrays, SLE,
- GBM, epigenetics, comparative evolution of mammals, and lipid
- membranes
+ H index of 11
-+ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
++ Numerous invited talks on EWAS of PTSD, genetics of SLE, and Open
Source: https://dla2.us/pres
* Funding and Awards