Updated Makefile

git-svn-id: svn+ssh://gene.bc.edu/home/subversion/Derek/BamTools/trunk@31 9efb377e-2e27-44b9-b91a-ec4abb80ed8b

diff --git a/Makefile b/Makefile
index b2b6c922373a1b236f96393fb15bf17947b92910..8d5aaab06a0d9f8fb5b406dc4216727013704807 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -5,14 +5,14 @@ LIBS=         -lz
 \r
 all: $(PROG)\r
 \r
-BamConversion: BamReader.o BamWriter.o BamConversionMain.o\r
-       $(CXX) $(CXXFLAGS) -o $@ BamReader.o BamWriter.o BamConversionMain.o $(LIBS)\r
+BamConversion: BGZF.o BamReader.o BamWriter.o BamConversionMain.o\r
+       $(CXX) $(CXXFLAGS) -o $@ BGZF.o BamReader.o BamWriter.o BamConversionMain.o $(LIBS)\r
 \r
-BamDump: BamReader.o BamDumpMain.o\r
-       $(CXX) $(CXXFLAGS) -o $@ BamReader.o BamDumpMain.o $(LIBS)\r
+BamDump: BGZF.o BamReader.o BamDumpMain.o\r
+       $(CXX) $(CXXFLAGS) -o $@ BGZF.o BamReader.o BamDumpMain.o $(LIBS)\r
 \r
-BamTrim: BamReader.o BamWriter.o BamTrimMain.o\r
-       $(CXX) $(CXXFLAGS) -o $@ BamReader.o BamWriter.o BamTrimMain.o $(LIBS)\r
+BamTrim: BGZF.o BamReader.o BamWriter.o BamTrimMain.o\r
+       $(CXX) $(CXXFLAGS) -o $@ BGZF.o BamReader.o BamWriter.o BamTrimMain.o $(LIBS)\r
 \r
 clean:\r
        rm -fr gmon.out *.o *.a a.out *~\r